Gene detail

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Gene detail information of Glyur005463s00042016.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47570.1	1.00E-117	Leucine-rich repeat protein kinase family protein
NR	XP_003619090.1	0	CCP [Medicago truncatula]
COG	YP_003888639.1	4.00E-24	serine/threonine protein kinase [Cyanothece sp. PCC 7822]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	5.00E-136	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|G7KI99\|G7KI99_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:AES75308.1}

Sequence

Transcript Sequence

>Glyur005463s00042016.1
AGAAATCAGTTGCATGGACCAATTCCTGATGTTCTGCAGAACATTTCTGTTTTAGAACACTTAAATGTTTCTTTTAACATGTTGGAAGGCGAGGTACCAACAGGAGGTGTTTTTGGAAATGCAAGCGGGTTAGCGGTGACTGGAAACAATAAGCTTTGTGGAGGAATTTCAAAGTTGCATTTACCGCCATGCCCTGTCAAAGGTATGAAACCAACAAAACACCATAATTTTAGGTTGATAGCAGTGATAGTTAGTGTGGTTGCTTTTCTTCTCATATTGTCATCTATTCTAACTATCTACTGGATGAGGAAAAGAAACAAGAAGCCATCTTCTGATTCACCAACAATTGACCAGCTAGCTAAGGTTTCATACCAAGACCTACATCATGGAACTGATGGGTTCTCAGCTACAAACTTGATTGGATCAGGAAGCTTTGGTTCTGTGTTCAAAGGAAATCTTGTGTCAGAAGATAAAGTTGTTGCCGTAAAGGTCTTGAACCTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTGCAGAATGTAATGCACTAAAAAATATTAGACATCGAAATCTGGTTAAGATTTTAACCTGTTGTTCCAGTACTGATTACAAAGGTCAAGAATTTAAAGCTCTAGTTTTTGAGTACATGAAAAATGGAAGCTTAGAACAATGGCTACATCCAACGACAGGAAGTGTGGAGGAGCTTCCTAAAGCATTAAACCTTAATCAAAGGTTAAATATCATTATCGATGTTGCTTCTGCGCTACATTATTTGCATCATGAATGTGACCAACTGGTCCTCCATTGTGATATGAAACCAAGCAATGTCCTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCATTGCAAGACTTGTCTCAACCATTGACAGTACCTCTCAGAAGGAAACTAGTGGTAGTACAATTGGAATAAAAGGAACTGTTGGCTATGCTCCTCCAGAGTATGGGATGGGTTCTCAAGTGTCCACATATGGCGACATGTATAGCTTTGGGATGCTTCTATTGGAAATGCTTACTGGAAGAAGACCCACTGATGAAATGTTTGAAGATGGTCAAAATCTGCATAACTTTGTTGAAATTTCATTTCCAAATAATCTTATACAGATTTTGGACCCACATCTTGTACCAAGAGATGAAGAAGCACCAACAGAAGATGGAATCAGTGAGAATCTTATTCCAACTATAGAGAAGTGCTTAGTTTCACTCTTGAGGATTGGACTTGCTTGTTCAGTGGAATCATCCAAAGAAAGAATGAATATAGTGGATGTCACTAGAGAGCTAAACAAAATCAGAAATGCATTCCTCGCTGGTGAGACTTATTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold05463	4	1463	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005463s00042016.1	PF00069.20	Pkinase	137	369	5.10E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.173
SRR1783600	control	0.175
SRR1783602	moderate drought stress	0.028
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.160
DRR006520	Root Summer glycyrrhizin high producing strain	0.079
DRR006521	Root Winter glycyrrhizin high producing strain	0.165
DRR006522	Root Winter glycyrrhizin high producing strain	0.241
DRR006523	Root Summer glycyrrhizin low producing strain	0.839
DRR006524	Root Summer glycyrrhizin low producing strain	0.689
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.549
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.642

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.830
SRR2868004	Drought Stress(Tissue:root)	1.068
SRR2967015	Control (Tissue:root)	0.624

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.262
SRR9715740	Leave	1.166
SRR9715741	Leave	1.101
SRR9715739	Root	0.180
SRR9715742	Root	0.729
SRR9715743	Root	0.677

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.019
SRR8749028	MeJA induced 9h	0.545
SRR8749029	MeJA induced 9h	0.619
SRR8749030	Uninduced	1.783
SRR8749031	Uninduced	0.814
SRR8749032	Uninduced	0.728

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.612
SRR8400027	Control-Root	0.338