Gene detail information of Glyur005570s00035455.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G41620.1 | 4.00E-14 | Nucleoporin interacting component (Nup93/Nic96-like) family protein |
| NR | KEH36919.1 | 9.22E-17 | core-2/I-branching enzyme [Medicago truncatula] |
| Swissprot | tr|O22224|NP93A_ARATH | 2.00E-15 | Nuclear pore complex protein NUP93A {ECO:0000303|PubMed:21189294} |
| trEMBL | tr|A0A072V4K7|A0A072V4K7_MEDTR | 3.00E-17 | Core-2/I-branching enzyme {ECO:0000313|EMBL:KEH36919.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05570 | 297 | 8298 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005570s00035455.1 | PF02485.16 | Branch | 25 | 48 | 2.20E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.498 |
| SRR1783600 | control | 1.773 |
| SRR1783602 | moderate drought stress | 12.802 |
| SRR1811619 | moderate drought stress | 13.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.035 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.930 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.391 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.035 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.847 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.782 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.361 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.086 |
| SRR2967015 | Control (Tissue:root) | 1.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.039 |
| SRR9715739 | Root | 0.162 |
| SRR9715742 | Root | 1.556 |
| SRR9715743 | Root | 0.712 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.289 |
| SRR8749028 | MeJA induced 9h | 8.069 |
| SRR8749029 | MeJA induced 9h | 0.296 |
| SRR8749030 | Uninduced | 0.749 |
| SRR8749031 | Uninduced | 0.015 |
| SRR8749032 | Uninduced | 0.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.663 |
| SRR8400027 | Control-Root | 4.345 |