Gene detail information of Glyur005579s00041505.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G17510.1 | 9.00E-115 | ribonuclease II family protein |
| NR | KHN25814.1 | 0 | Exosome complex exonuclease RRP44 [Glycine soja] |
| trEMBL | tr|I1KB85|I1KB85_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G14870.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05579 | 1134 | 3710 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K12585 | DIS3, RRP44 | EC:3.1.13.- | RNA degradation | map03018 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005579s00041505.1 | PF13638.1 | PIN_4 | 54 | 177 | 3.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.121 |
| SRR1783600 | control | 11.317 |
| SRR1783602 | moderate drought stress | 15.238 |
| SRR1811619 | moderate drought stress | 15.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.531 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.039 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.676 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.274 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.264 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.917 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.282 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 26.807 |
| SRR2868004 | Drought Stress(Tissue:root) | 29.107 |
| SRR2967015 | Control (Tissue:root) | 29.540 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.173 |
| SRR9715740 | Leave | 7.117 |
| SRR9715741 | Leave | 9.228 |
| SRR9715739 | Root | 3.625 |
| SRR9715742 | Root | 18.862 |
| SRR9715743 | Root | 16.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.056 |
| SRR8749028 | MeJA induced 9h | 22.331 |
| SRR8749029 | MeJA induced 9h | 4.268 |
| SRR8749030 | Uninduced | 5.287 |
| SRR8749031 | Uninduced | 3.513 |
| SRR8749032 | Uninduced | 2.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 29.861 |
| SRR8400027 | Control-Root | 29.785 |