Gene detail information of Glyur005602s00044967.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09155.1 | 7.00E-17 | phloem protein 2-B15 |
| NR | XP_003605073.1 | 8.71E-43 | F-box protein PP2-B14 [Medicago truncatula] |
| Swissprot | tr|O80494|P2B15_ARATH | 7.00E-20 | F-box protein PP2-B15 |
| trEMBL | tr|G7JDE2|G7JDE2_MEDTR | 3.00E-43 | F-box protein {ECO:0000313|EMBL:AES87270.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05602 | 127 | 656 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005602s00044967.1 | PF00646.28 | F-box | 17 | 59 | 2.00E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.894 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.864 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.310 |
| SRR2967015 | Control (Tissue:root) | 4.778 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.092 |
| SRR9715740 | Leave | 1.360 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.832 |
| SRR8749028 | MeJA induced 9h | 2.629 |
| SRR8749029 | MeJA induced 9h | 1.240 |
| SRR8749030 | Uninduced | 2.965 |
| SRR8749031 | Uninduced | 3.704 |
| SRR8749032 | Uninduced | 4.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.495 |
| SRR8400027 | Control-Root | 1.004 |