Gene detail information of Glyur005603s00039254.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G65940.13.00E-138beta-hydroxyisobutyryl-CoA hydrolase 1
NRXP_004510202.10PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Cicer arietinum]
COGYP_002297565.16.00E-80enoyl-CoA hydratase [Rhodospirillum centenum SW]
Swissprottr|Q9LKJ1|HIBC1_ARATH03-hydroxyisobutyryl-CoA hydrolase 1
trEMBLtr|A0A072TX02|A0A072TX02_MEDTR03-hydroxyisobutyryl-CoA hydrolase-like protein {ECO:0000313|EMBL:KEH18075.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0560313198374-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05605HIBCH EC:3.1.2.4 Carbon metabolism map01200
Propanoate metabolismmap00640
Valine, leucine and isoleucine degradationmap00280
beta-Alanine metabolismmap00410


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur005603s00039254.1PF00378.15ECH222291.10E-27
Glyur005603s00039254.1PF13766.1ECH_C2583771.60E-34


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.875
SRR1783600control26.156
SRR1783602moderate drought stress23.924
SRR1811619moderate drought stress23.172

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.887
DRR006520Root Summer glycyrrhizin high producing strain34.674
DRR006521Root Winter glycyrrhizin high producing strain24.816
DRR006522Root Winter glycyrrhizin high producing strain23.896
DRR006523Root Summer glycyrrhizin low producing strain23.795
DRR006524Root Summer glycyrrhizin low producing strain22.423
DRR006525Leaf Summer glycyrrhizin high producing strain20.423
DRR006526Leaf Summer glycyrrhizin high producing strain19.618

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)48.086
SRR2868004Drought Stress(Tissue:root)43.957
SRR2967015Control (Tissue:root)43.441

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave40.035
SRR9715740Leave44.523
SRR9715741Leave58.980
SRR9715739Root6.579
SRR9715742Root18.970
SRR9715743Root17.413

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h31.886
SRR8749028MeJA induced 9h35.235
SRR8749029MeJA induced 9h32.223
SRR8749030Uninduced45.077
SRR8749031Uninduced33.133
SRR8749032Uninduced40.656

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root57.572
SRR8400027Control-Root54.162

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved