Gene detail

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Gene detail information of Glyur005623s00044495.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18250.1	1.00E-94	receptor serine/threonine kinase, putative
NR	XP_003624367.1	0	Ser/Thr protein kinase [Medicago truncatula]
COG	YP_001958461.1	6.00E-25	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|D7SFH9\|GPDL2_ARATH	4.00E-104	Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 {ECO:0000305} (Precursor)
trEMBL	tr\|G7KUD5\|G7KUD5_MEDTR	0	Receptor-like kinase {ECO:0000313\|EMBL:AES80585.2}

Sequence

Transcript Sequence

>Glyur005623s00044495.1
TCAGAACGAAACTGGAAGCTTATTGTAGGTGCATCAGTTGCTGCATTTGGAGTAACAATATTCTTTATTATGATTAGTTGTTATTTTAAGAGGGGTATAGGGGGACAAAAGAGGATTTTCAAGAAAAGAAGTAAATTTGTTGACCACAATGTGGAAGCATTCATTCGAAGTTACAATTTGTCAATGCCAAAGAGATATAATTATGCAGAAGTGAAAAGAATCACAAACTCATTCCGAGATAAGTTAGGTCAAGGAGGATATGGTGTTGTGTACAAAGCAAGCTTACCAGATGGTCGTCATGTGGCGGTGAAAGTAATCAGCGAGTCCAAGGGAAATGGTGAAGAATTCATAAATGAAGTTGCTAGCATTAGCAAAACGTCACATGTGAACATTGTCTCACTTTTGGGTTTTTGTTATGAGATGAACAAAAGAGCACTAATGTATGAATTCATGCCTAATGGATCATTGGATAAGTTCATCTATAAAAGTGGGTTTCCAACTGCTATTTGTAATTTGGATTGGAACACATTGTTCCAAATTGCAATTGGCATTGCTCGAGGTCTAGAGTACCTTCATCACGGATGTGCTTCAAGAATTTTGCATCTCGATATTAAACCCCAAAACATTCTTTTGGATGAAGATTTTTGCCCCAAAATCTCTGATTTTGGATTGGGTAAAATATGCCAAAAGAAGGAGAGTATTGTGTCCATATTGGGCACAAGAGGAACCATAGGGTACATAGCGCCAGAAGTATTTAGTCGAGCATTTGGTGGAGTTTCTCACAAGTCTAATGTATACAGTTATGACATGCTGATTCTTGAAATGATTAGAGGAAGAAAGAATCATGACAGTGGAGGGTCACATACCACTGAAATGTACTTTCCNGACTGGATTTATAAGGATCTTGATCTAGCTAATGCTCTTGTGAATTGTTTGGCAATCTCAAAGGAAGAAAATGATATGGTAAGGAAGATTACTATGGATGATGATGATGATGATGATAGCCAATACAGTAACTGCAAAAACGCTTTCTCCTGCGGAAGCAGCACCGTCTCAAACCTCCCCAACTACCCATTCTGGGGAGAAAACAGATCGGGTTATTGCGGTGATGGTCAATCTATGTTAGAGCTCACATGCGAAGATGGTGCCCCCAAGACGACAATCGATCTCATCAAATACCGAATTCTTGATTGGGACAATACAACACAAGTATCAGCACTTGCATCTGGCAACGGGACGGACCTAACACAAGAAGTACAACTTGCAATTCACAAAGGGCCCCAACCTCTTCCTCAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold05623	364	4822	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005623s00044495.1	PF00069.20	Pkinase	80	285	3.50E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.042
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.021
DRR006520	Root Summer glycyrrhizin high producing strain	0.021
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.638
DRR006524	Root Summer glycyrrhizin low producing strain	0.575
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.322
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.246

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.573
SRR2868004	Drought Stress(Tissue:root)	2.219
SRR2967015	Control (Tissue:root)	1.510

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.539
SRR9715740	Leave	0.732
SRR9715741	Leave	1.006
SRR9715739	Root	0.000
SRR9715742	Root	0.572
SRR9715743	Root	0.158

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.288
SRR8749028	MeJA induced 9h	3.295
SRR8749029	MeJA induced 9h	1.287
SRR8749030	Uninduced	4.648
SRR8749031	Uninduced	0.755
SRR8749032	Uninduced	0.833

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.143
SRR8400027	Control-Root	0.330