Gene detail

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Gene detail information of Glyur005639s00046573.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G34370.2	2.00E-49	C2H2 and C2HC zinc fingers superfamily protein
NR	XP_004502417.1	2.31E-139	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q9C8N5\|STOP1_ARATH	2.00E-69	Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
trEMBL	tr\|I1MYR4\|I1MYR4_SOYBN	4.00E-137	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G02010.1}

Sequence

Transcript Sequence

>Glyur005639s00046573.1
ATGTCCAAACCGAACCCTGATTCACATGACGCGACCCGAATGCCCAACCCGCGGGATTACCCGAATAGCACAGCGGACCCTCAGGTTCCGCTTCGGAACCTATCCCTGGTTCGGACGAGAATAGATTCTCTACGGACCTTCCTATCCCAATCCATCAACACCAACGCTCCCCTCACCAACGACCAAACCACCGTCGTCTCCAACCATATCGCCTCCGCCATCCACCACATCATAGTCAACGGCTCCGCCCTCGTTTCCAATTACTCTCACAATCTCACCCTCGCCGCCGCCACGCCGCCGGAGAAACCCTCCGCCACCGATTCGAAAATCGCCGACGACGGCGACGATTGCAAAATCGCGGAGCTCGACGCGGTGGAACTTCTCGCCGAGCACATCCACTTCTGCGAGATTTGCGGTAAAGGGTTCAGGCGAGACGCGAACCTCCGGATGCACATGCGAGCCCACGGGAACCAGTTCAAGACGCCGGAAGCGCTCGCCAAGCCTCCGCCGGAGAATTGCGCCGCCGCCGCCTCACGCCGGAAGGCCACGACGCGGTTCTCGTGCCCGTTCGAGGGGTGTAGCAGGAACAGGAATCACGCGAAGTTCATGTCGCTGAAGTCGGTGGTGTGCGTGAGGAACCATTTCAAGAGGAGCCACTGCCCGAAGATGTACACGTGCAACACGTGCCACAGGAAGAGCTTCTCGGTGCTCTCTGACTTGAAGAGCCACATGAAGCACTGTGGTGGTGAGTCTGAGTCAAAGTCGTCGAAATGGAAGTGCTCGTGTGGGACCACGTTTTCCAGGAAGGCCAAGTTGTTCGGACACGTGGCACTTTTTGAGGGCCACATGCCTGCTCTTGCCTTGGACGAAAAAGGGAAACAGTTACTGGTGGTGGAGGAAAGTGAGGAGGATCCTAAGGTGGTGATGACGGAAGGTGAATTGGGTAATTGTTTTCTGGATGATGATGGGTTGTTGCCGGAGGAGTTCTTTGATGATTTTGAGTCCATTGATAACTATAGTTTCACATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold05639	5592	6620	-

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005639s00046573.1	PF00096.21	zf-C2H2	134	155	0.00011
Glyur005639s00046573.1	PF00096.21	zf-C2H2	224	247	0.027

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.902
SRR1783600	control	6.817
SRR1783602	moderate drought stress	4.681
SRR1811619	moderate drought stress	4.965

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.958
DRR006520	Root Summer glycyrrhizin high producing strain	5.904
DRR006521	Root Winter glycyrrhizin high producing strain	1.697
DRR006522	Root Winter glycyrrhizin high producing strain	1.783
DRR006523	Root Summer glycyrrhizin low producing strain	5.544
DRR006524	Root Summer glycyrrhizin low producing strain	5.205
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.296
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.027

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	9.230
SRR2868004	Drought Stress(Tissue:root)	10.933
SRR2967015	Control (Tissue:root)	10.015

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	6.464
SRR9715740	Leave	5.669
SRR9715741	Leave	7.268
SRR9715739	Root	17.614
SRR9715742	Root	10.401
SRR9715743	Root	10.125

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.819
SRR8749028	MeJA induced 9h	2.011
SRR8749029	MeJA induced 9h	2.499
SRR8749030	Uninduced	1.812
SRR8749031	Uninduced	0.401
SRR8749032	Uninduced	0.888

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	6.621
SRR8400027	Control-Root	5.575