Gene detail information of Glyur005711s00045445.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT3G55120.1 | 7.00E-50 | Chalcone-flavanone isomerase family protein |
NR | P28012.1 | 2.87E-126 | RecName: Full=Chalcone--flavonone isomerase 1; Short=Chalcone isomerase 1 [Medicago sativa] |
Swissprot | tr|P28012|CFI1_MEDSA | 1.00E-128 | Chalcone--flavonone isomerase 1 |
trEMBL | tr|U5TRY3|U5TRY3_MEDSA | 1.00E-126 | Chalcone-flavonone isomerase family protein {ECO:0000256|RuleBase:RU361158} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold05711 | 108 | 1932 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K01859 | E5.5.1.6 | EC:5.5.1.6 | Flavonoid biosynthesis | map00941 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur005711s00045445.1 | PF02431.10 | Chalcone | 18 | 212 | 3.00E-51 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 115.983 |
SRR1783600 | control | 116.089 |
SRR1783602 | moderate drought stress | 149.674 |
SRR1811619 | moderate drought stress | 149.503 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 34.081 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 33.592 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 25.859 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 25.827 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 66.947 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 67.460 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.365 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.357 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 442.795 |
SRR2868004 | Drought Stress(Tissue:root) | 603.783 |
SRR2967015 | Control (Tissue:root) | 602.452 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 158.308 |
SRR9715740 | Leave | 62.453 |
SRR9715741 | Leave | 258.618 |
SRR9715739 | Root | 235.812 |
SRR9715742 | Root | 221.984 |
SRR9715743 | Root | 207.660 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 107.977 |
SRR8749028 | MeJA induced 9h | 168.542 |
SRR8749029 | MeJA induced 9h | 108.477 |
SRR8749030 | Uninduced | 259.407 |
SRR8749031 | Uninduced | 114.992 |
SRR8749032 | Uninduced | 84.553 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 592.226 |
SRR8400027 | Control-Root | 497.257 |