Gene detail information of Glyur005711s00045445.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G55120.17.00E-50Chalcone-flavanone isomerase family protein
NRP28012.12.87E-126RecName: Full=Chalcone--flavonone isomerase 1; Short=Chalcone isomerase 1 [Medicago sativa]
Swissprottr|P28012|CFI1_MEDSA1.00E-128Chalcone--flavonone isomerase 1
trEMBLtr|U5TRY3|U5TRY3_MEDSA1.00E-126Chalcone-flavonone isomerase family protein {ECO:0000256|RuleBase:RU361158}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold057111081932-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01859E5.5.1.6 EC:5.5.1.6 Flavonoid biosynthesis map00941


Gene Ontology

biological_process

GO:0009813  flavonoid biosynthetic process


molecular_function

GO:0016872  intramolecular lyase activity

GO:0045430  chalcone isomerase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur005711s00045445.1PF02431.10Chalcone182123.00E-51


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control115.983
SRR1783600control116.089
SRR1783602moderate drought stress149.674
SRR1811619moderate drought stress149.503

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.081
DRR006520Root Summer glycyrrhizin high producing strain33.592
DRR006521Root Winter glycyrrhizin high producing strain25.859
DRR006522Root Winter glycyrrhizin high producing strain25.827
DRR006523Root Summer glycyrrhizin low producing strain66.947
DRR006524Root Summer glycyrrhizin low producing strain67.460
DRR006525Leaf Summer glycyrrhizin high producing strain22.365
DRR006526Leaf Summer glycyrrhizin high producing strain22.357

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)442.795
SRR2868004Drought Stress(Tissue:root)603.783
SRR2967015Control (Tissue:root)602.452

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave158.308
SRR9715740Leave62.453
SRR9715741Leave258.618
SRR9715739Root235.812
SRR9715742Root221.984
SRR9715743Root207.660

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h107.977
SRR8749028MeJA induced 9h168.542
SRR8749029MeJA induced 9h108.477
SRR8749030Uninduced259.407
SRR8749031Uninduced114.992
SRR8749032Uninduced84.553

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root592.226
SRR8400027Control-Root497.257