Gene detail information of Glyur005723s00044879.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72590.1 | 4.00E-06 | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein |
| NR | XP_004515418.1 | 2.79E-32 | PREDICTED: uncharacterized protein LOC101491224 [Cicer arietinum] |
| Swissprot | tr|Q7XUH5|POED1_ORYSJ | 5.00E-07 | Polyprenol reductase 1 |
| trEMBL | tr|G7LB25|G7LB25_MEDTR | 4.00E-25 | Uncharacterized protein {ECO:0000313|EMBL:AET02890.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05723 | 1028 | 4262 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K12345 | SRD5A3 | EC:1.3.1.22 1.3.1.94 | Steroid hormone biosynthesis | map00140 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005723s00044879.1 | PF02544.11 | Steroid_dh | 90 | 121 | 1.30E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.320 |
| SRR1783600 | control | 0.161 |
| SRR1783602 | moderate drought stress | 0.524 |
| SRR1811619 | moderate drought stress | 0.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.066 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.065 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.089 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.065 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 27.543 |
| SRR2868004 | Drought Stress(Tissue:root) | 26.137 |
| SRR2967015 | Control (Tissue:root) | 31.671 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.025 |
| SRR9715740 | Leave | 0.009 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.517 |
| SRR8749028 | MeJA induced 9h | 3.943 |
| SRR8749029 | MeJA induced 9h | 12.084 |
| SRR8749030 | Uninduced | 2.304 |
| SRR8749031 | Uninduced | 5.279 |
| SRR8749032 | Uninduced | 8.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.018 |
| SRR8400027 | Control-Root | 0.003 |