Gene detail information of Glyur005725s00044951.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G08860.1 | 1.00E-37 | PYRIMIDINE 4 |
| NR | ACJ85549.1 | 1.33E-70 | unknown [Medicago truncatula] |
| COG | YP_005446575.1 | 5.00E-27 | aminotransferase [Phycisphaera mikurensis NBRC 102666] |
| Swissprot | tr|Q9SR86|AGT23_ARATH | 4.00E-43 | Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial (Precursor) |
| trEMBL | tr|B7FLB5|B7FLB5_MEDTR | 5.00E-71 | Putative uncharacterized protein {ECO:0000313|EMBL:ACJ85549.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05725 | 4257 | 5581 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005725s00044951.1 | PF00202.16 | Aminotran_3 | 141 | 206 | 1.30E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.762 |
| SRR1783600 | control | 5.482 |
| SRR1783602 | moderate drought stress | 12.815 |
| SRR1811619 | moderate drought stress | 12.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.551 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.192 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 29.886 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.536 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.653 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.265 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.775 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.642 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.639 |
| SRR2967015 | Control (Tissue:root) | 2.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.942 |
| SRR9715740 | Leave | 2.407 |
| SRR9715741 | Leave | 4.646 |
| SRR9715739 | Root | 4.710 |
| SRR9715742 | Root | 13.880 |
| SRR9715743 | Root | 10.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.984 |
| SRR8749028 | MeJA induced 9h | 14.880 |
| SRR8749029 | MeJA induced 9h | 4.183 |
| SRR8749030 | Uninduced | 3.841 |
| SRR8749031 | Uninduced | 1.643 |
| SRR8749032 | Uninduced | 4.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.478 |
| SRR8400027 | Control-Root | 5.845 |