Gene detail

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Gene detail information of Glyur005809s00045660.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22400.1	6.00E-75	PLAT/LH2 domain-containing lipoxygenase family protein
NR	XP_003626860.1	0	Lipoxygenase [Medicago truncatula]
Swissprot	tr\|Q41238\|LOX16_SOLTU	5.00E-85	Linoleate 9S-lipoxygenase 6 (Fragment)
trEMBL	tr\|G7LEB2\|G7LEB2_MEDTR	0	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur005809s00045660.1
ATGACTATGACTATTATAATGACCTTGGTGACCCTGACAAAGGTCCAGAGCATATTAGACCTGTCCTGGGTGGCTCAAGGTCCATCAACTGAGAGCAGGCCACAAGCAACAAAATTCGACATATACATTCCTTCAGATGAGAGATTTAGCCCCAGCAAATTGAAGGAGCTCAAATCAAATTCTATCCATGCCATGGTACATTTTCTATCAATTAAGGTAGAATCATTACCTCAACGAAGTTCTAGAAGCTTTCAGTCATTTGAAGAGATACTTGACATGCTCTCTAGCAATAAAAGCCAAACAATAGAAGGATGGATCAGAGACAACTTAAAGAAACTGGTACCAGTTGAATACTTAAAGGAAGTAACTCAAGCAATCAAGGAAAACCATCAGCAATTCCTGTTCCTCAAATCATATCTGTCATTCCCACCTCAAAACAAATTCGGAGTACAGAGTTCAATGAATCGATCAATCATAGAACAGAAGCTTGAAGGATGGANACTTCCTCAGGCAATGGAACAGGGAAGAATATTCATGCTGGACCACCATGACTATCTCATGCCATATTTGAACNGAATAAACGCAAATGGGGTATGTGCTTATGCATCCAGGACACTTCTATTCTTAAGGAGTGGTGGAATGCTTAAGCCACTGACAATAGAACTTAGCTTGCCAGGCTCATCTCTAGATCGCGAAATCCAAAGAATTTTTCTTCCAGCCAAGCAGGGAACACAAGCAGCACTTTGGCAGCTTGCTAAAGCTCATGTTTTAGCCAATGATAATGTTTACCATCAACTAATTAGCCATTGGTTATACAGCCATGCAGTTGTTGAACCATTTATCCTTGCTACCAAAAGAAGGCTAAGTGTAATGCATCCAATCCATCGGATATTGAGTCCTCATTTCAANGACACCATGCACATAAATGCCTTGGCACGACTCATCCTCATTAACTCAGGAGGGATTCTGGAGAGAACATTATTTCCTGGTGAAATCTGTATGCAAATATCCTGTGATCTCTATAAAGAGTGGAAATTTAATGAACAAGGACTTCCTGCTGATCTACTCAAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold05809	4893	7783	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00454	LOX2S	EC:1.13.11.12	Linoleic acid metabolism	map00591
K00454	LOX2S	EC:1.13.11.12	alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005809s00045660.1	PF00305.14	Lipoxygenase	31	133	2.20E-07
Glyur005809s00045660.1	PF00305.14	Lipoxygenase	137	357	6.10E-79

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.107
SRR1783600	control	0.098
SRR1783602	moderate drought stress	0.118
SRR1811619	moderate drought stress	0.123

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.238
DRR006520	Root Summer glycyrrhizin high producing strain	0.580
DRR006521	Root Winter glycyrrhizin high producing strain	0.624
DRR006522	Root Winter glycyrrhizin high producing strain	0.313
DRR006523	Root Summer glycyrrhizin low producing strain	0.347
DRR006524	Root Summer glycyrrhizin low producing strain	0.472
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.061
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.086

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.340
SRR2868004	Drought Stress(Tissue:root)	0.671
SRR2967015	Control (Tissue:root)	0.333

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.044
SRR9715740	Leave	0.059
SRR9715741	Leave	0.015
SRR9715739	Root	0.000
SRR9715742	Root	0.028
SRR9715743	Root	0.026

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.079
SRR8749028	MeJA induced 9h	0.057
SRR8749029	MeJA induced 9h	0.119
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.068

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.112
SRR8400027	Control-Root	0.121