Gene detail information of Glyur005820s00040144.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G22400.10PLAT/LH2 domain-containing lipoxygenase family protein
NRXP_006576654.10PREDICTED: linoleate 9S-lipoxygenase 5, chloroplastic-like isoform X1 [Glycine max]
Swissprottr|Q9LUW0|LOX5_ARATH0Linoleate 9S-lipoxygenase 5, chloroplastic
trEMBLtr|I1JMA5|I1JMA5_SOYBN0Lipoxygenase {ECO:0000256|RuleBase:RU003975}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold058204195382-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00454LOX2S EC:1.13.11.12 Linoleic acid metabolism map00591
alpha-Linolenic acid metabolismmap00592


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005515  protein binding

GO:0016491  oxidoreductase activity

GO:0016702  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur005820s00040144.1PF01477.18PLAT621698.80E-11
Glyur005820s00040144.1PF00305.14Lipoxygenase1818511.40E-214


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.171
SRR1783600control0.189
SRR1783602moderate drought stress0.215
SRR1811619moderate drought stress0.245

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.794
DRR006520Root Summer glycyrrhizin high producing strain0.716
DRR006521Root Winter glycyrrhizin high producing strain0.042
DRR006522Root Winter glycyrrhizin high producing strain0.124
DRR006523Root Summer glycyrrhizin low producing strain1.884
DRR006524Root Summer glycyrrhizin low producing strain1.800
DRR006525Leaf Summer glycyrrhizin high producing strain0.412
DRR006526Leaf Summer glycyrrhizin high producing strain0.458

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.521
SRR2868004Drought Stress(Tissue:root)2.597
SRR2967015Control (Tissue:root)2.154

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.203
SRR9715740Leave0.121
SRR9715741Leave0.130
SRR9715739Root0.095
SRR9715742Root0.565
SRR9715743Root0.141

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.127
SRR8749028MeJA induced 9h0.106
SRR8749029MeJA induced 9h0.091
SRR8749030Uninduced0.128
SRR8749031Uninduced0.219
SRR8749032Uninduced0.135

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.418
SRR8400027Control-Root0.534

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved