Gene detail

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Gene detail information of Glyur005837s00044557.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G66920.2	6.00E-91	Protein kinase superfamily protein
NR	XP_003589630.1	0	Kinase R-like protein [Medicago truncatula]
COG	YP_001958461.1	1.00E-25	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|D7SFH9\|GPDL2_ARATH	5.00E-93	Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 {ECO:0000305} (Precursor)
trEMBL	tr\|G7I971\|G7I971_MEDTR	0	Receptor-like kinase {ECO:0000313\|EMBL:AES59891.2}

Sequence

Transcript Sequence

>Glyur005837s00044557.1
ATGTTCCTCTCAGCAGCAGCAGATCGACTGCAAAATAGAACACAAATTGCTACTCAAACTAAGAATCAGGAGAATGGAGTAAGTAGGAGGAGGAAATTATTGGGAAGATACTATAGGACTCACAGTGAGATTGAACATTCTCATAAACCCAGACCATATGTACCTACTACCCTATACAATTTTGCACAGTGCCAAACACTCTTGCTCAAGATAATGGTAAAAATGTTCTCTTCCATTGGACTGTTGTTGTTCATGGTTTGCCTTAATGCTGGGCAGCATGCAGTTGGGACAGGCACAGTTAATAATTGTCCAGATTTATCATGCGGAAATCAGGTCATCCGGTTCCCTTTCCGGATCAAAGGCCTCCATCCACCACCCTGCGGCTTTCCCGGCTTTGATTTATCTTGTTCCTCAAATAATGAGACTCTAATTGAACTCCCTGAGTCAGTGAAGCTCACCGTCAAAAATATTGACTACACACAGCAGACCATTGAACTGTCTGATCCAAACGGTTGCCTTTACAGACAACTCCACAACCTCACTCTATCTGCAGCCTCTCCTTTCCAGTTCACGGAGCCCGACTATTATTATATTACCTATCAATTGTTCAATTGTTCGCTGATGAATAGAGACTCGCTGGGCTCCTTTTTGGTTCCGTGCCTATCCACCTCAAGCTCTCATCAAGCATACGCCATTCCGTCGAGTGAATCCATTGGGTTCCTGCCCTTGTCGTTTTGCACCAAAATGTTTAATGTTTCATTCAACCCATTTGATTTTAGTCCCGACGACAACTTTCTTCGTTTGACATGGTCTGAGCCGAAGTGTAATCATTGCGAATCTCAGGGAAACAGATGTGGGTGGAACACTACCAACAAGGAAATAAATTGTTCCTCCAAAACCCACAAAGGGTCAATCCTAGGATCGCTATTTTTTATCCTGTTGACTGGTGCAGTCTACCACGTCTATGACTCTTACATGCTGAAGAAAGAAAAACAAGCAATTATTGAAAAATTTCTACAAGACTATAGGGCTCTTAAGCCCACCAGATACTCTTATGTGGAAATCAAGAGAATCACCAACAATTTTGAGGACAAGTTGGGACAGGGAGCCTATGGAACTGTTTATAAAGGAAGCATTTCAAAGGAATTTACAGTTGCTGTGAAGATCCTGAATGTTTCCCAAGGAAATGGGGAAAACTTCATCAACAAAGTTGGTACAATGGGTAGAATCCACCACGTTAACATTGTTCGCTTGGTCGGTTTCTGCGCCGATGGCTTTAAAAGAGCTCTTGTTTACGAGTTCTTGCCAAATGGATCACTGCAGAAGTTCATAAATTCACCAGACAACAGGCAAAACTTCCTAGGTTGGAAAAGGCTGCACGAAATTGCTTTAGGAATAGCTAAAGGGATTGAGTACCTCCATCAGGGTTGTGATCAGCGCATTCTCCATTTTGATATCAAACCACAAAATGTGTTGCTAGATCATAACTTTGCTCCAAAAATATGTGACTTTGGTCTAGCTAAATTGTGTTCAAGGGATCAGAGCATAGTGTCAATGACCACAGCTAGAGGAACTTTGGGCTACATTGCTCCCGAAGTTTTCTCAAGGAACTTTGGAAATGTGTCTTACAAGTCAGATGTTTATAGTTACGGAATGATGCTGCTTGAAACAATAGGAGGGAGGAAGATCACGGAGGACTTAGGGGAAAACACTGGCCATGTTTACTACCCAGAATGGATTTATAATCTTTTGGAAGAACGGGAGGAATTGAGAATTCATGTTGATGATGAAGGGGATGCAAAGATTGCAAGGAAATTGGCCATTGTGGGACTTTGGTGCATTCAGTGGCATGGCATGCTATGGATCGACCATCAATGCAAATGGTGGTTCAAATGTTAGAGGGAGATGGGGACAGAACCCCAATACCTCCTAATCCCCTTGCTTCTGGTTCTGGAGGACCAAGGAGAAAGAGGGAAAGTGCAACTGTGGGTGCGGCTGGTCAACACCTAACCCAAGATTTGGAAGTAATTCAAGAGTTAGATTGACTTGTACTTCCAAGTTACAGTTGTGAAATAGGTTTTACTTGTTTTACTTTAATGTATCTTAAGATGTCCCATCAAATTGACATGAAGTTTTTTACTATTAATTTTGCATTGGATTGGATGGCGAAACACGAAGTATCCTTTGTCATTTTG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold05837	2	4070	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups GO:0030247 polysaccharide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005837s00044557.1	PF13947.1	GUB_WAK_bind	102	169	3.30E-08
Glyur005837s00044557.1	PF00069.20	Pkinase	363	570	5.00E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.171
SRR1783600	control	0.203
SRR1783602	moderate drought stress	0.020
SRR1811619	moderate drought stress	0.031

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.016
DRR006520	Root Summer glycyrrhizin high producing strain	0.016
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.235
DRR006524	Root Summer glycyrrhizin low producing strain	2.080
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.423
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.919

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.331
SRR2868004	Drought Stress(Tissue:root)	1.383
SRR2967015	Control (Tissue:root)	0.248

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	34.718
SRR9715740	Leave	9.712
SRR9715741	Leave	67.983
SRR9715739	Root	0.103
SRR9715742	Root	0.766
SRR9715743	Root	1.065

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.030
SRR8749029	MeJA induced 9h	0.055
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.613
SRR8400027	Control-Root	0.452