Gene detail information of Glyur005852s00044965.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G02120.12.00E-76CTP synthase family protein
NRKEH43210.17.76E-112CTP synthase-like protein [Medicago truncatula]
COGYP_008072153.16.00E-80CTP synthetase [Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1]
trEMBLtr|A0A072VYQ7|A0A072VYQ7_MEDTR3.00E-112CTP synthase {ECO:0000256|RuleBase:RU810713}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold058525181900-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01937pyrG, CTPS EC:6.3.4.2 Pyrimidine metabolism map00240


Gene Ontology

biological_process

GO:0006221  pyrimidine nucleotide biosynthetic process


molecular_function

GO:0003883  CTP synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur005852s00044965.1PF06418.9CTP_synth_N11703.20E-86


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.697
SRR1783600control7.693
SRR1783602moderate drought stress10.492
SRR1811619moderate drought stress10.138

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.155
DRR006520Root Summer glycyrrhizin high producing strain8.809
DRR006521Root Winter glycyrrhizin high producing strain9.018
DRR006522Root Winter glycyrrhizin high producing strain8.370
DRR006523Root Summer glycyrrhizin low producing strain7.697
DRR006524Root Summer glycyrrhizin low producing strain8.121
DRR006525Leaf Summer glycyrrhizin high producing strain5.446
DRR006526Leaf Summer glycyrrhizin high producing strain5.122

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.557
SRR2868004Drought Stress(Tissue:root)6.596
SRR2967015Control (Tissue:root)13.512

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.209
SRR9715740Leave5.460
SRR9715741Leave3.518
SRR9715739Root2.409
SRR9715742Root8.221
SRR9715743Root6.428

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.981
SRR8749028MeJA induced 9h8.289
SRR8749029MeJA induced 9h3.312
SRR8749030Uninduced1.930
SRR8749031Uninduced1.066
SRR8749032Uninduced1.166

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.384
SRR8400027Control-Root14.247

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved