Gene detail information of Glyur005862s00044221.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G30970.1 | 8.00E-102 | zinc finger (C2H2 type) family protein |
| NR | XP_004503319.1 | 0 | PREDICTED: zinc finger protein 207-like [Cicer arietinum] |
| Swissprot | tr|Q9C5G0|SUF4_ARATH | 2.00E-151 | Protein SUPPRESSOR OF FRI 4 |
| trEMBL | tr|G7LCD1|G7LCD1_MEDTR | 0 | C2H2-type zinc finger protein {ECO:0000313|EMBL:AET05498.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05862 | 1855 | 5797 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 64.075 |
| SRR1783600 | control | 64.368 |
| SRR1783602 | moderate drought stress | 93.702 |
| SRR1811619 | moderate drought stress | 93.549 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 51.350 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 50.183 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 90.298 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 89.390 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 60.465 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 61.163 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 37.047 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 37.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 89.314 |
| SRR2868004 | Drought Stress(Tissue:root) | 103.983 |
| SRR2967015 | Control (Tissue:root) | 107.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 46.441 |
| SRR9715740 | Leave | 44.977 |
| SRR9715741 | Leave | 72.838 |
| SRR9715739 | Root | 34.511 |
| SRR9715742 | Root | 41.320 |
| SRR9715743 | Root | 39.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 85.515 |
| SRR8749028 | MeJA induced 9h | 120.717 |
| SRR8749029 | MeJA induced 9h | 76.996 |
| SRR8749030 | Uninduced | 71.834 |
| SRR8749031 | Uninduced | 101.572 |
| SRR8749032 | Uninduced | 83.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 100.124 |
| SRR8400027 | Control-Root | 89.721 |