Gene detail information of Glyur005877s00045519.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G14530.11.00E-67Transducin/WD40 repeat-like superfamily protein
NRXP_004493359.11.34E-91PREDICTED: WD repeat-containing protein 82-like [Cicer arietinum]
COGYP_007053496.12.00E-12WD40 repeat-containing protein [Rivularia sp. PCC 7116]
Swissprottr|Q8H0T9|KTNB1_ARATH2.00E-09Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022}
trEMBLtr|I3S1K4|I3S1K4_MEDTR3.00E-90Uncharacterized protein {ECO:0000313|EMBL:AFK34146.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold058776155581-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur005877s00045519.1PF00400.27WD4022540.0001
Glyur005877s00045519.1PF00400.27WD401071442.40E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.232
SRR1783600control10.827
SRR1783602moderate drought stress9.853
SRR1811619moderate drought stress9.700

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.983
DRR006520Root Summer glycyrrhizin high producing strain10.710
DRR006521Root Winter glycyrrhizin high producing strain12.551
DRR006522Root Winter glycyrrhizin high producing strain9.495
DRR006523Root Summer glycyrrhizin low producing strain7.055
DRR006524Root Summer glycyrrhizin low producing strain7.500
DRR006525Leaf Summer glycyrrhizin high producing strain11.133
DRR006526Leaf Summer glycyrrhizin high producing strain9.572

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.840
SRR2868004Drought Stress(Tissue:root)14.749
SRR2967015Control (Tissue:root)13.525

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.189
SRR9715740Leave9.226
SRR9715741Leave9.285
SRR9715739Root7.243
SRR9715742Root5.919
SRR9715743Root10.872

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.488
SRR8749028MeJA induced 9h7.809
SRR8749029MeJA induced 9h4.982
SRR8749030Uninduced2.173
SRR8749031Uninduced2.003
SRR8749032Uninduced1.920

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.612
SRR8400027Control-Root17.655

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved