Gene detail information of Glyur005878s00047498.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G47056.1 | 5.00E-174 | VIER F-box proteine 1 |
| NR | XP_003589128.1 | 0 | F-box protein [Medicago truncatula] |
| Swissprot | tr|Q9C626|FB37_ARATH | 0 | F-box protein At1g47056 |
| trEMBL | tr|Q2HTR2|Q2HTR2_MEDTR | 0 | F-box SKIP2-like protein {ECO:0000313|EMBL:AES59379.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05878 | 3109 | 4788 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005878s00047498.1 | PF00646.28 | F-box | 70 | 102 | 1.20E-08 |
| Glyur005878s00047498.1 | PF13516.1 | LRR_6 | 159 | 183 | 0.18 |
| Glyur005878s00047498.1 | PF13516.1 | LRR_6 | 422 | 443 | 0.33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 37.204 |
| SRR1783600 | control | 37.510 |
| SRR1783602 | moderate drought stress | 53.397 |
| SRR1811619 | moderate drought stress | 53.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 48.833 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 48.714 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 33.341 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 32.596 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 65.466 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 64.243 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.902 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 107.956 |
| SRR2868004 | Drought Stress(Tissue:root) | 137.580 |
| SRR2967015 | Control (Tissue:root) | 153.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 42.935 |
| SRR9715740 | Leave | 46.591 |
| SRR9715741 | Leave | 46.157 |
| SRR9715739 | Root | 127.386 |
| SRR9715742 | Root | 74.291 |
| SRR9715743 | Root | 84.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 79.324 |
| SRR8749028 | MeJA induced 9h | 64.525 |
| SRR8749029 | MeJA induced 9h | 45.536 |
| SRR8749030 | Uninduced | 51.472 |
| SRR8749031 | Uninduced | 49.353 |
| SRR8749032 | Uninduced | 71.798 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 83.840 |
| SRR8400027 | Control-Root | 88.916 |