Gene detail

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Gene detail information of Glyur005896s00044949.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15490.1	2.00E-99	UDP-glucose 6-dehydrogenase family protein
NR	KHN30001.1	5.10E-127	UDP-glucose 6-dehydrogenase [Glycine soja]
COG	YP_003548756.1	4.00E-77	nucleotide sugar dehydrogenase [Coraliomargarita akajimensis DSM 45221]
Swissprot	tr\|Q2QS14\|UGDH4_ORYSJ	2.00E-122	UDP-glucose 6-dehydrogenase 4
trEMBL	tr\|I1JED0\|I1JED0_SOYBN	3.00E-127	UDP-glucose 6-dehydrogenase {ECO:0000256\|PIRNR:PIRNR000124}

Sequence

Transcript Sequence

>Glyur005896s00044949.1
GAAGAATGAAGCAACACAGTCGTACAATGAAGCAACCCGAAGTCTCTGAAGAGGAAGAACGAAGAAAAAACAAAGACGCCGTGGTCCTTCAACGACGCGACGCGGGCACGTGGTGGTCCTTCAACGACGCGGCGCGAGAAGAGAGAGCGCTGAGAGTGAGAGTGAGGCGAGATAAGGGTTTTGGGAATGAGAGTGAGAGTAAGGGTTTTGGGAATGAGAGTGAGAGTGGGAGGGAGGCGAGAGTGAGACTGAGAGTGTCGCACTCGATCGGCACTGACTCGAGAATTGGACCCAAGTTCTTGAATGCCAGTGTTGGTTTTGGTGGGTCTTGCTTCCAGAAGGACATACTGAACCTGGTCTATATCTGTGAGTGCAATGGCCTTCCTGAGGTGGCCAACTACTGGAAACAGGTCATCAAGGTGAACGACTACCAGAAAACCCGTTTCGTGAACCGGGTGGTTTCCTCGATGTTCAACACGGTTTCAGGGAAGAAAATCGCTGTCTTGGGATTTGCCTTCAAGAAGGACACTGGTGACACTAGGGAGACCCAGCAATTGATGTGTGCAAGGGGCTATTGGGACAAGGCAAGGTTGAGCATATATGATCCTCAGGTTACTGAAGAGCAAATCCAGAGGATCTTTGCAATGAAGAAGTTTGATTGGGACCACCCTGCTCATCTTCAACCACCAAGCCCAACAATTTCCAACAAGCAAGTGCAATCAAAGGATGCACATGGTGTTTGCATTCTGACTGAGTGGGATGAGTTCAAGAAGCTTGATTACCAGAAGATGTATGACAACATGCAGAAGCCAGCATTTGTCTTCGATGGCAGGAACATTGTGGATGTTAACAAGCTGAGGGAAATTGACTCTTGGCTCAAGGACATGCCTGCAGTGCTTAAAGTGGGAAACAAAAAGCACAACTTGGAGCTTCTGCCTTTCAGGGTGGTTCAATTTGTTGGTCTTTCTAAGAGGATGGCCTCATCC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold05896	195	3936	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00012	UGDH, ugd	EC:1.1.1.22	Pentose and glucuronate interconversions	map00040
			Ascorbate and aldarate metabolism	map00053
			Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0003979 UDP-glucose 6-dehydrogenase activity GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0051287 NAD binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005896s00044949.1	PF00984.14	UDPG_MGDP_dh	83	143	1.80E-14
Glyur005896s00044949.1	PF03720.10	UDPG_MGDP_dh_C	165	280	1.80E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.192
SRR1783600	control	3.102
SRR1783602	moderate drought stress	1.451
SRR1811619	moderate drought stress	1.653

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.801
DRR006520	Root Summer glycyrrhizin high producing strain	9.636
DRR006521	Root Winter glycyrrhizin high producing strain	8.820
DRR006522	Root Winter glycyrrhizin high producing strain	9.017
DRR006523	Root Summer glycyrrhizin low producing strain	6.853
DRR006524	Root Summer glycyrrhizin low producing strain	7.166
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.095
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.788

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.631
SRR2868004	Drought Stress(Tissue:root)	0.507
SRR2967015	Control (Tissue:root)	0.652

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.600
SRR9715740	Leave	0.439
SRR9715741	Leave	0.562
SRR9715739	Root	1.159
SRR9715742	Root	1.012
SRR9715743	Root	1.795

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.909
SRR8749028	MeJA induced 9h	0.398
SRR8749029	MeJA induced 9h	0.913
SRR8749030	Uninduced	0.014
SRR8749031	Uninduced	0.036
SRR8749032	Uninduced	4.576

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.319
SRR8400027	Control-Root	0.300