Gene detail information of Glyur005913s00045896.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G29360.20UDP-glucose 6-dehydrogenase family protein
NRXP_003614035.10UDP-D-glucose dehydrogenase [Medicago truncatula]
COGYP_003548756.10nucleotide sugar dehydrogenase [Coraliomargarita akajimensis DSM 45221]
Swissprottr|Q2QS14|UGDH4_ORYSJ0UDP-glucose 6-dehydrogenase 4
trEMBLtr|G7JWR8|G7JWR8_MEDTR0UDP-glucose 6-dehydrogenase {ECO:0000256|PIRNR:PIRNR000124}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0591355206965+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00012UGDH, ugd EC:1.1.1.22 Pentose and glucuronate interconversions map00040
Ascorbate and aldarate metabolismmap00053
Amino sugar and nucleotide sugar metabolismmap00520


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003979  UDP-glucose 6-dehydrogenase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur005913s00045896.1PF03721.9UDPG_MGDP_dh_N31854.30E-63
Glyur005913s00045896.1PF00984.14UDPG_MGDP_dh2093061.40E-33
Glyur005913s00045896.1PF03720.10UDPG_MGDP_dh_C3284521.20E-36


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control67.705
SRR1783600control68.321
SRR1783602moderate drought stress26.671
SRR1811619moderate drought stress27.213

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain106.281
DRR006520Root Summer glycyrrhizin high producing strain104.133
DRR006521Root Winter glycyrrhizin high producing strain94.271
DRR006522Root Winter glycyrrhizin high producing strain90.987
DRR006523Root Summer glycyrrhizin low producing strain81.408
DRR006524Root Summer glycyrrhizin low producing strain81.127
DRR006525Leaf Summer glycyrrhizin high producing strain37.231
DRR006526Leaf Summer glycyrrhizin high producing strain36.455

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)152.632
SRR2868004Drought Stress(Tissue:root)81.800
SRR2967015Control (Tissue:root)72.684

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave87.893
SRR9715740Leave51.174
SRR9715741Leave76.835
SRR9715739Root112.193
SRR9715742Root133.086
SRR9715743Root135.235

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h474.213
SRR8749028MeJA induced 9h316.563
SRR8749029MeJA induced 9h267.072
SRR8749030Uninduced41.631
SRR8749031Uninduced34.047
SRR8749032Uninduced70.864

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root113.427
SRR8400027Control-Root143.939

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved