Gene detail information of Glyur005951s00041506.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02650.1 | 7.00E-06 | Ribonuclease H-like superfamily protein |
| NR | XP_007031938.1 | 6.84E-18 | Ribonuclease H protein [Theobroma cacao] |
| Swissprot | tr|P0C2F6|RNHX1_ARATH | 1.00E-13 | Putative ribonuclease H protein At1g65750 |
| trEMBL | tr|A0A061EKN7|A0A061EKN7_THECC | 3.00E-18 | Ribonuclease H protein {ECO:0000313|EMBL:EOY02864.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05951 | 512 | 6845 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005951s00041506.2 | PF02362.16 | B3 | 224 | 303 | 3.10E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.643 |
| SRR1783600 | control | 1.504 |
| SRR1783602 | moderate drought stress | 0.080 |
| SRR1811619 | moderate drought stress | 0.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.856 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.135 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.861 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.712 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.742 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.897 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.877 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.514 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.599 |
| SRR2967015 | Control (Tissue:root) | 0.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.312 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.903 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.467 |
| SRR9715743 | Root | 1.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.006 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.009 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.993 |
| SRR8400027 | Control-Root | 0.463 |