Gene detail information of Glyur005963s00043883.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G45340.10Leucine-rich repeat protein kinase family protein
NRKEH22283.10LRR receptor-like kinase [Medicago truncatula]
COGYP_004579826.13.00E-29hypothetical protein [Lacinutrix sp. 5H-3-7-4]
Swissprottr|Q8RY65|NIK2_ARATH2.00E-69Protein NSP-INTERACTING KINASE 2 (Precursor)
trEMBLtr|A0A072TZI0|A0A072TZI0_MEDTR0LRR receptor-like kinase {ECO:0000313|EMBL:KEH22283.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold059632085280-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.13.2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur005963s00043883.1PF08263.7LRRNT_225643.40E-07
Glyur005963s00043883.1PF13855.1LRR_81391992.30E-06
Glyur005963s00043883.1PF00560.28LRR_12122310.42
Glyur005963s00043883.1PF07714.12Pkinase_Tyr4296724.30E-32


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.628
SRR1783600control5.688
SRR1783602moderate drought stress23.590
SRR1811619moderate drought stress23.357

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain24.993
DRR006520Root Summer glycyrrhizin high producing strain24.896
DRR006521Root Winter glycyrrhizin high producing strain2.660
DRR006522Root Winter glycyrrhizin high producing strain2.638
DRR006523Root Summer glycyrrhizin low producing strain14.631
DRR006524Root Summer glycyrrhizin low producing strain14.679
DRR006525Leaf Summer glycyrrhizin high producing strain0.889
DRR006526Leaf Summer glycyrrhizin high producing strain0.722

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.797
SRR2868004Drought Stress(Tissue:root)4.852
SRR2967015Control (Tissue:root)3.815

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.173
SRR9715740Leave0.226
SRR9715741Leave0.137
SRR9715739Root5.323
SRR9715742Root11.471
SRR9715743Root10.864

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.062
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root56.777
SRR8400027Control-Root64.681

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved