Gene detail information of Glyur006011s00043769.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G44980.22.00E-135SNF2 domain-containing protein / helicase domain-containing protein
NRKEH22412.10Nodule-specific Glycine Rich Peptide [Medicago truncatula]
COGYP_007944738.16.00E-47DNA/RNA helicase, superfamily II, SNF2 family [Desulfotomaculum gibsoniae DSM 7213]
Swissprottr|Q7G8Y3|ISW2_ORYSJ6.00E-75Probable chromatin-remodeling complex ATPase chain
trEMBLtr|A0A072TYC3|A0A072TYC3_MEDTR0Nodule-specific Glycine Rich Peptide {ECO:0000313|EMBL:KEH22412.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold060115906427-


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur006011s00043769.1PF00176.18SNF2_N12586.10E-43
Glyur006011s00043769.1PF00271.26Helicase_C3123793.60E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.705
SRR1783600control1.593
SRR1783602moderate drought stress2.994
SRR1811619moderate drought stress2.963

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.112
DRR006520Root Summer glycyrrhizin high producing strain2.529
DRR006521Root Winter glycyrrhizin high producing strain1.809
DRR006522Root Winter glycyrrhizin high producing strain1.481
DRR006523Root Summer glycyrrhizin low producing strain3.260
DRR006524Root Summer glycyrrhizin low producing strain2.945
DRR006525Leaf Summer glycyrrhizin high producing strain1.145
DRR006526Leaf Summer glycyrrhizin high producing strain1.110

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.177
SRR2868004Drought Stress(Tissue:root)4.692
SRR2967015Control (Tissue:root)6.426

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.985
SRR9715740Leave2.115
SRR9715741Leave1.937
SRR9715739Root0.445
SRR9715742Root2.300
SRR9715743Root1.544

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.099
SRR8749028MeJA induced 9h3.318
SRR8749029MeJA induced 9h1.314
SRR8749030Uninduced0.978
SRR8749031Uninduced0.421
SRR8749032Uninduced0.199

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.222
SRR8400027Control-Root4.195

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved