Gene detail information of Glyur006062s00044203.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13930.10Chalcone and stilbene synthase family protein
NRXP_003531225.10PREDICTED: chalcone synthase 1 isoform X1 [Glycine max]
COGYP_680369.13.00E-46naringenin-chalcone synthase [Cytophaga hutchinsonii ATCC 33406]
Swissprottr|P24826|CHS1_SOYBN0Chalcone synthase 1
trEMBLtr|Q6X0M8|Q6X0M8_SOYBN0Chalcone synthase CHS1 {ECO:0000313|EMBL:AAQ62597.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0606238325425+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00660CHS EC:2.3.1.74 Flavonoid biosynthesis map00941
Circadian rhythm - plantmap04712


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0016746  transferase activity, transferring acyl groups

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur006062s00044203.1PF00195.14Chal_sti_synt_N32284.50E-130
Glyur006062s00044203.1PF02797.10Chal_sti_synt_C2383873.60E-78


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.460
SRR1783600control0.478
SRR1783602moderate drought stress0.760
SRR1811619moderate drought stress0.747

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.890
DRR006520Root Summer glycyrrhizin high producing strain0.816
DRR006521Root Winter glycyrrhizin high producing strain0.093
DRR006522Root Winter glycyrrhizin high producing strain0.169
DRR006523Root Summer glycyrrhizin low producing strain2.788
DRR006524Root Summer glycyrrhizin low producing strain2.779
DRR006525Leaf Summer glycyrrhizin high producing strain10.060
DRR006526Leaf Summer glycyrrhizin high producing strain9.673

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)45.991
SRR2868004Drought Stress(Tissue:root)178.897
SRR2967015Control (Tissue:root)61.427

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave122.593
SRR9715740Leave34.245
SRR9715741Leave295.699
SRR9715739Root11.162
SRR9715742Root19.662
SRR9715743Root19.053

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.506
SRR8749028MeJA induced 9h5.224
SRR8749029MeJA induced 9h4.571
SRR8749030Uninduced152.288
SRR8749031Uninduced66.348
SRR8749032Uninduced38.199

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.238
SRR8400027Control-Root6.999

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved