Gene detail information of Glyur006160s00046644.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00870.1 | 1.00E-39 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_003520013.2 | 2.57E-122 | PREDICTED: transcription factor MYC2-like [Glycine max] |
| Swissprot | tr|O23090|BH014_ARATH | 3.00E-49 | Transcription factor bHLH14 |
| trEMBL | tr|V7C1D9|V7C1D9_PHAVU | 1.00E-118 | Uncharacterized protein {ECO:0000313|EMBL:ESW23959.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06160 | 2455 | 3642 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006160s00046644.1 | PF14215.1 | bHLH-MYC_N | 22 | 176 | 4.10E-29 |
| Glyur006160s00046644.1 | PF00010.21 | HLH | 237 | 282 | 1.30E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.019 |
| SRR1783600 | control | 1.059 |
| SRR1783602 | moderate drought stress | 0.448 |
| SRR1811619 | moderate drought stress | 0.445 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.917 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.089 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.751 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.703 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.124 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.149 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.462 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.507 |
| SRR2967015 | Control (Tissue:root) | 0.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.176 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.385 |
| SRR9715739 | Root | 1.615 |
| SRR9715742 | Root | 4.819 |
| SRR9715743 | Root | 3.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.054 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.051 |
| SRR8400027 | Control-Root | 1.623 |