Gene detail

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Gene detail information of Glyur006176s00044556.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16120.2	2.00E-105	alpha/beta-Hydrolases superfamily protein
NR	XP_003555156.1	1.75E-170	PREDICTED: caffeoylshikimate esterase isoform X1 [Glycine max]
COG	YP_003571913.1	8.00E-32	lysophospholipase [Salinibacter ruber M8]
Swissprot	tr\|Q9C942\|CSE_ARATH	7.00E-50	Caffeoylshikimate esterase
trEMBL	tr\|I1LX24\|I1LX24_SOYBN	8.00E-171	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G07630.1}

Sequence

Transcript Sequence

>Glyur006176s00044556.1
CAGACTCCATGTGATGGACTAAAAATGAAAGAGTCATATGAGGTGAACTCAAGGGGCATAGAGATCTTTTGTAAGAGTTGGCTTCCTGGGGAAACTAGTCCCAAAGCAGCAGTGTTTTTTTGTCATGGTTATGGAGACACTTGCACTTTCTTCTTTGAAGGCATAAAGCTGGCATCATCTGGATATGGAGTTTTCGCTATGGATTATCCAGGATTCGGTCTTTCGGAAGGTCTCCATGGCTATATTCCCAAAAACCCAGAGTTCCATTCTCTTCCCAGCTTCCTATTTGGACAATCTATGGGTGGTGCTGTTGCATTGAAGATTCACCTGAAACAACCTAAGGCATGGGATGGTGCCATTCTCGTCGCGCCAATGTGTAAAATTGCAGGGGAAATGGTTCCGCCAAAGTTGGTCACTCAGATACTGATTGGTATAGCCAATGTTCTTCCTAGGCATAAGTTAGTTCCAATGAAGGATTTAGCAGAGTCAGCATTCAAAGATTCAAAGAAGAGGGAACAGACAGCCTATAATGTTATTGTTTACAAGGACAAACCGCGCTTGCGGAGTGCTTTAGAAATGCTTAGAACTACCGAAGAAATAGAACGGCGATTGGAAGAAGTCTCTCTACCATTATTAATCCTTCATGGGGAAGCTGACACTGTGACTGAGCCATCAGTGAGCAAAGCCTTGTATGAAAAAGCAAGCTCTTCAGACAAGAAGCTTAAGCTTTACAAGNATGCCTACCATGCTCTTCTTGAGGGTGAGCCTGATGAAACAATAGTTGAAGCTTTTGGTGACATCATTTCTTGGCTTGATGAGCACAGCTTGAAACAACAAAATCAATCTTCCTCTTAAATACTGATTATTATTTCTTCACCATCTCTTGGTTCAAAAGAAGAATATTCATATTGCTTTAAGCTATAAGAAAATAAAAAGTTGGTATTGCTTCTATACAAGTAACTAGAGCATCAAAATTTGTTGTTTGTTCTTTACAATTTTACAGTCAATTACCAGACCATAGTCATGTTTTATATGAATGATATATAAAACTTNAGAGGTGATACGTGTCCTAGCCCGAGAGGTG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold06176	1470	5533	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01054	MGLL	EC:3.1.1.23	Glycerolipid metabolism	map00561
			Regulation of lipolysis in adipocyte	map04923
			Retrograde endocannabinoid signaling	map04723

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006176s00044556.1	PF12697.2	Abhydrolase_6	38	259	9.80E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.410
SRR1783600	control	12.838
SRR1783602	moderate drought stress	13.512
SRR1811619	moderate drought stress	13.292

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.440
DRR006520	Root Summer glycyrrhizin high producing strain	29.762
DRR006521	Root Winter glycyrrhizin high producing strain	29.625
DRR006522	Root Winter glycyrrhizin high producing strain	29.230
DRR006523	Root Summer glycyrrhizin low producing strain	13.305
DRR006524	Root Summer glycyrrhizin low producing strain	13.727
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.588
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.710

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	64.076
SRR2868004	Drought Stress(Tissue:root)	88.173
SRR2967015	Control (Tissue:root)	74.338

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	42.874
SRR9715740	Leave	46.475
SRR9715741	Leave	47.489
SRR9715739	Root	2.490
SRR9715742	Root	14.821
SRR9715743	Root	11.453

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.059
SRR8749028	MeJA induced 9h	91.494
SRR8749029	MeJA induced 9h	48.812
SRR8749030	Uninduced	86.405
SRR8749031	Uninduced	127.651
SRR8749032	Uninduced	80.809

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	37.976
SRR8400027	Control-Root	29.657