Gene detail information of Glyur006206s00043489.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42870.1 | 2.00E-113 | phosphatidic acid phosphohydrolase 2 |
| NR | XP_004499067.1 | 0 | PREDICTED: phosphatidate phosphatase LPIN1-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9FMN2|PAH2_ARATH | 3.00E-130 | Phosphatidate phosphatase PAH2 |
| trEMBL | tr|I1MXP5|I1MXP5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G36130.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06206 | 460 | 5993 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K15728 | LPIN | EC:3.1.3.4 | Glycerolipid metabolism | map00561 |
| Glycerophospholipid metabolism | map00564 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006206s00043489.1 | PF04571.9 | Lipin_N | 1 | 98 | 2.70E-27 |
| Glyur006206s00043489.1 | PF08235.8 | LNS2 | 366 | 521 | 4.40E-65 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.366 |
| SRR1783600 | control | 3.208 |
| SRR1783602 | moderate drought stress | 5.303 |
| SRR1811619 | moderate drought stress | 5.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.363 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.345 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.431 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.440 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.049 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.330 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.296 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 16.530 |
| SRR2868004 | Drought Stress(Tissue:root) | 12.932 |
| SRR2967015 | Control (Tissue:root) | 15.070 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.508 |
| SRR9715740 | Leave | 5.363 |
| SRR9715741 | Leave | 4.197 |
| SRR9715739 | Root | 1.831 |
| SRR9715742 | Root | 5.373 |
| SRR9715743 | Root | 5.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.065 |
| SRR8749028 | MeJA induced 9h | 11.236 |
| SRR8749029 | MeJA induced 9h | 5.765 |
| SRR8749030 | Uninduced | 22.525 |
| SRR8749031 | Uninduced | 22.746 |
| SRR8749032 | Uninduced | 17.811 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.200 |
| SRR8400027 | Control-Root | 33.583 |