Gene detail

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Gene detail information of Glyur006269s00045759.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18990.1	6.00E-103	AP2/B3-like transcriptional factor family protein
NR	XP_004498177.1	0	PREDICTED: B3 domain-containing transcription factor VRN1-like [Cicer arietinum]
Swissprot	tr\|Q8L3W1\|VRN1_ARATH	2.00E-125	B3 domain-containing transcription factor VRN1
trEMBL	tr\|I1ND23\|I1ND23_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G01130.1}

Sequence

Transcript Sequence

>Glyur006269s00045759.1
AAGGTTTTAAAAATCCTTGTTTGACTCAAAAAGCAGAGAAGGGTGGAGGAGACGGTGAAGAACAACTAGATCTGAGGTGCTAAGCTGATTCCCCCAAAGTTTTCAACTTTCAATCAAAATCTCAATGATGCTTTGAACCCCCCCTCCCCAAAACAAACACTCTCACAATGCCACGCCCTTGTTTCTACAAGCTTATTCTCCCCACAACCCTTCAATCCCGGCAACTGAGGATTCCGGATAATTTTCTGAGGAAATATGGGGGCCAGCTTTCGACAGTTGCTACCCTCACTGTTCCTGATGGCAGTGTTTGGCATGTAGGATTAAAAAAGGCTGACAACAGAATTTGGTTCCTTGATGGTTGGCAAGAATTTGTTCAACGCTACTCCATTGGCGTTGGATACTTCATAGTATTCATGTATGAAGGGAATGCATCTTTCATTGTTCATATTTTTAATATGAGTACTTCAGAGGTGAGTTATCAATCAGCCATGAGAAGCCGTAACGAAGGGCCTTGCTATGCAAATTATCACCATATTTTTGATGAAATGGAAGATATAGATTCCTTTGAGTTCATGGATTCCTCACCTTCAAGCCTTACTTCTGGTGCATTGCAAAACAAGGTTTTTNCTGGATCTGTAGATCAACTGACACCTGGGAAGAGTCATACTCATACTCCGGCATTGCAGAATTTGTTTAATGGTGGGTCTAAACTCAATCGCGTAAACTGGGGAGATAGTGTTGGTGATTTTTCTTCAAAGGGTGCCAATCAGTCAACCAGAGATATAGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAGGTCTACTGAAGAATTGAAATTGCGATATTCTAATGAGGAAGGGGTTCAAAAAACCGTAAGAAAGAAGCGGAAATCAGATTCCAATGGACAGGAACCCTCTTCCGACAACGAAGAGGAGGTGCACATGCGTTTTAGATTTTACGAAAGTGCATCTGCAAGGAAAAGAACTGTGACAGCCGAGGAAAGAGAAAGGGCAATTAATGCTGCAAAAGCATTTGAACCACTCAATCCTTTCTGCCGGGTTGTCCTACGACCCTCCTATTTATATAGGGGATGCATAATGTATTTGCCGTCCTGCTTTGCAGAAAAGAATTTGAATGGGGTTTCNGGATTCATTAAGCTTCAGATCTCNGATGGGAGACAGTGGCCTGTTCGCTGCCTTTATAGAGGAGGTCGAGCAAAGTTAAGCCAGGGGTGGTTNGAATTTACATTGGAGAACAATCTAGGGGAAGGTGATGTNTGTGTGTTTGAGCTGCTGAGAACCAAGGATGTAGTGCTGCAAGTTACTGTGTTTCGAGTAATCGAGGATAATACAGGGTTGTTGAACCCTACTATGATGCAGCAGAGCCAAAATGTGAGCCATACTAAACTGTTGAACCCTCACTTGCAGCACCGCGTCAGCACAACCAAATTGGTTAGAAATTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold06269	1860	4722	+

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006269s00045759.1	PF02362.16	B3	9	96	2.40E-15
Glyur006269s00045759.1	PF02362.16	B3	299	389	1.40E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.185
SRR1783600	control	21.900
SRR1783602	moderate drought stress	31.544
SRR1811619	moderate drought stress	30.501

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.528
DRR006520	Root Summer glycyrrhizin high producing strain	32.323
DRR006521	Root Winter glycyrrhizin high producing strain	20.432
DRR006522	Root Winter glycyrrhizin high producing strain	19.384
DRR006523	Root Summer glycyrrhizin low producing strain	44.545
DRR006524	Root Summer glycyrrhizin low producing strain	44.448
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.507
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.945

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	61.146
SRR2868004	Drought Stress(Tissue:root)	40.359
SRR2967015	Control (Tissue:root)	48.917

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	24.320
SRR9715740	Leave	24.518
SRR9715741	Leave	28.580
SRR9715739	Root	23.234
SRR9715742	Root	30.076
SRR9715743	Root	35.429

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.943
SRR8749028	MeJA induced 9h	39.797
SRR8749029	MeJA induced 9h	24.592
SRR8749030	Uninduced	20.768
SRR8749031	Uninduced	18.175
SRR8749032	Uninduced	14.565

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	49.787
SRR8400027	Control-Root	45.270