Gene detail information of Glyur006288s00046750.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G62360.1 | 3.00E-52 | KNOX/ELK homeobox transcription factor |
| NR | ADC35600.1 | 4.88E-73 | class I KNOX homeobox transcription factor STM-like 2 [Prunus persica] |
| Swissprot | tr|P46608|HSBH1_SOYBN | 8.00E-70 | Homeobox protein SBH1 |
| trEMBL | tr|D3IWE9|D3IWE9_PRUPE | 2.00E-73 | Class I KNOX homeobox transcription factor STM-like 2 {ECO:0000313|EMBL:ADC35600.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06288 | 3 | 543 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006288s00046750.1 | PF03789.8 | ELK | 1 | 21 | 6.40E-11 |
| Glyur006288s00046750.1 | PF05920.6 | Homeobox_KN | 40 | 79 | 1.20E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.872 |
| SRR1783600 | control | 36.530 |
| SRR1783602 | moderate drought stress | 56.689 |
| SRR1811619 | moderate drought stress | 57.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 192.826 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 186.678 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 140.937 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 130.592 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 147.024 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 148.687 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.461 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.098 |
| SRR2967015 | Control (Tissue:root) | 17.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 4.407 |
| SRR9715742 | Root | 3.364 |
| SRR9715743 | Root | 2.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.042 |
| SRR8400027 | Control-Root | 16.306 |