Gene detail information of Glyur006289s00045766.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G02730.14.00E-93Transducin/WD40 repeat-like superfamily protein
NRXP_004495198.11.15E-135PREDICTED: WD repeat-containing protein 5-like [Cicer arietinum]
COGYP_001864889.12.00E-43hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102]
Swissprottr|Q8W1K8|MUT11_CHLRE6.00E-67Protein Mut11
trEMBLtr|A0A0A0K8V6|A0A0A0K8V6_CUCSA4.00E-135Uncharacterized protein {ECO:0000313|EMBL:KGN44807.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold06289212933-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur006289s00045766.1PF00400.27WD4019541.20E-11
Glyur006289s00045766.1PF00400.27WD4060965.20E-12
Glyur006289s00045766.1PF00400.27WD401001382.80E-13
Glyur006289s00045766.1PF00400.27WD401421802.90E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control30.047
SRR1783600control29.931
SRR1783602moderate drought stress39.628
SRR1811619moderate drought stress38.937

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.104
DRR006520Root Summer glycyrrhizin high producing strain18.467
DRR006521Root Winter glycyrrhizin high producing strain23.666
DRR006522Root Winter glycyrrhizin high producing strain22.845
DRR006523Root Summer glycyrrhizin low producing strain18.074
DRR006524Root Summer glycyrrhizin low producing strain17.548
DRR006525Leaf Summer glycyrrhizin high producing strain12.141
DRR006526Leaf Summer glycyrrhizin high producing strain12.051

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.284
SRR2868004Drought Stress(Tissue:root)9.338
SRR2967015Control (Tissue:root)11.579

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.910
SRR9715740Leave10.716
SRR9715741Leave12.421
SRR9715739Root24.428
SRR9715742Root17.101
SRR9715743Root15.311

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.694
SRR8749028MeJA induced 9h14.737
SRR8749029MeJA induced 9h15.062
SRR8749030Uninduced16.372
SRR8749031Uninduced12.049
SRR8749032Uninduced10.657

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.315
SRR8400027Control-Root9.410

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved