Gene detail information of Glyur006322s00041935.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G11640.14.00E-135serine racemase
NRXP_003630530.10Serine racemase [Medicago truncatula]
COGYP_917682.14.00E-97pyridoxal-5'-phosphate-dependent protein subunit beta [Paracoccus denitrificans PD1222]
Swissprottr|Q2PGG3|SRR_ARATH2.00E-172Serine racemase
trEMBLtr|G7LI09|G7LI09_MEDTR0Serine/threonine dehydratase serine racemase {ECO:0000313|EMBL:AET05006.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0632225260+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12235SRR EC:5.1.1.18 Glycine, serine and threonine metabolism map00260


Gene Ontology

biological_process

GO:0006520  cellular amino acid metabolic process


cellular_component

GO:0005622  intracellular


molecular_function

GO:0003779  actin binding

GO:0030170  pyridoxal phosphate binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur006322s00041935.1PF00291.20PALP293197.10E-70
Glyur006322s00041935.1PF00241.15Cofilin_ADF3364581.20E-44


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.462
SRR1783600control2.604
SRR1783602moderate drought stress2.551
SRR1811619moderate drought stress2.705

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.273
DRR006520Root Summer glycyrrhizin high producing strain3.737
DRR006521Root Winter glycyrrhizin high producing strain3.149
DRR006522Root Winter glycyrrhizin high producing strain3.026
DRR006523Root Summer glycyrrhizin low producing strain2.372
DRR006524Root Summer glycyrrhizin low producing strain2.564
DRR006525Leaf Summer glycyrrhizin high producing strain2.192
DRR006526Leaf Summer glycyrrhizin high producing strain2.272

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.616
SRR2868004Drought Stress(Tissue:root)7.772
SRR2967015Control (Tissue:root)8.242

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.748
SRR9715740Leave4.847
SRR9715741Leave5.175
SRR9715739Root1.229
SRR9715742Root3.047
SRR9715743Root2.511

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.706
SRR8749028MeJA induced 9h1.511
SRR8749029MeJA induced 9h1.653
SRR8749030Uninduced1.563
SRR8749031Uninduced0.977
SRR8749032Uninduced0.606

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.742
SRR8400027Control-Root7.041

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved