Gene detail information of Glyur006322s00041935.2 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT4G11640.1 | 4.00E-135 | serine racemase |
NR | XP_003630530.1 | 0 | Serine racemase [Medicago truncatula] |
COG | YP_917682.1 | 4.00E-97 | pyridoxal-5'-phosphate-dependent protein subunit beta [Paracoccus denitrificans PD1222] |
Swissprot | tr|Q2PGG3|SRR_ARATH | 2.00E-172 | Serine racemase |
trEMBL | tr|G7LI09|G7LI09_MEDTR | 0 | Serine/threonine dehydratase serine racemase {ECO:0000313|EMBL:AET05006.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold06322 | 2 | 5260 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K12235 | SRR | EC:5.1.1.18 | Glycine, serine and threonine metabolism | map00260 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur006322s00041935.2 | PF00291.20 | PALP | 32 | 285 | 2.20E-56 |
Glyur006322s00041935.2 | PF00241.15 | Cofilin_ADF | 302 | 424 | 1.00E-44 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 2.462 |
SRR1783600 | control | 2.604 |
SRR1783602 | moderate drought stress | 2.551 |
SRR1811619 | moderate drought stress | 2.705 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 3.273 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 3.737 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 3.149 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 3.026 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 2.372 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 2.564 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.192 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.272 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 7.616 |
SRR2868004 | Drought Stress(Tissue:root) | 7.772 |
SRR2967015 | Control (Tissue:root) | 8.242 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 3.748 |
SRR9715740 | Leave | 4.847 |
SRR9715741 | Leave | 5.175 |
SRR9715739 | Root | 1.229 |
SRR9715742 | Root | 3.047 |
SRR9715743 | Root | 2.511 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 1.706 |
SRR8749028 | MeJA induced 9h | 1.511 |
SRR8749029 | MeJA induced 9h | 1.653 |
SRR8749030 | Uninduced | 1.563 |
SRR8749031 | Uninduced | 0.977 |
SRR8749032 | Uninduced | 0.606 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 7.742 |
SRR8400027 | Control-Root | 7.041 |