Gene detail information of Glyur006379s00042445.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G66200.12.00E-129glutamine synthase clone F11
NRAAD52008.11.88E-177cytosolic glutamine synthetase [Canavalia lineata]
COGYP_008733525.19.00E-62glutamate--ammonia ligase [Actinoplanes friuliensis DSM 7358]
Swissprottr|P04771|GLNA2_PHAVU2.00E-179Glutamine synthetase PR-2
trEMBLtr|Q9SWY8|Q9SWY8_CANLI7.00E-178Glutamine synthetase {ECO:0000256|RuleBase:RU004356}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold063795844201-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01915glnA, GLUL EC:6.3.1.2 Biosynthesis of amino acids map01230
Glyoxylate and dicarboxylate metabolismmap00630
Nitrogen metabolismmap00910
Alanine, aspartate and glutamate metabolismmap00250
Arginine biosynthesismap00220
Two-component systemmap02020
Glutamatergic synapsemap04724
GABAergic synapsemap04727


Gene Ontology

biological_process

GO:0006542  glutamine biosynthetic process

GO:0006807  nitrogen compound metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004356  glutamate-ammonia ligase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur006379s00042445.1PF03951.14Gln-synt_N19937.40E-09
Glyur006379s00042445.1PF00120.19Gln-synt_C1002531.40E-32


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.284
SRR1783600control3.683
SRR1783602moderate drought stress1.157
SRR1811619moderate drought stress1.201

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.998
DRR006520Root Summer glycyrrhizin high producing strain4.020
DRR006521Root Winter glycyrrhizin high producing strain1.249
DRR006522Root Winter glycyrrhizin high producing strain1.091
DRR006523Root Summer glycyrrhizin low producing strain6.216
DRR006524Root Summer glycyrrhizin low producing strain5.521
DRR006525Leaf Summer glycyrrhizin high producing strain0.386
DRR006526Leaf Summer glycyrrhizin high producing strain0.390

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.562
SRR2868004Drought Stress(Tissue:root)6.455
SRR2967015Control (Tissue:root)8.835

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.452
SRR9715740Leave0.581
SRR9715741Leave0.111
SRR9715739Root1.978
SRR9715742Root0.201
SRR9715743Root0.576

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.013
SRR8749028MeJA induced 9h5.546
SRR8749029MeJA induced 9h7.456
SRR8749030Uninduced1.408
SRR8749031Uninduced0.817
SRR8749032Uninduced1.340

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.390
SRR8400027Control-Root3.069

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved