Gene detail information of Glyur006388s00043251.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G13340.20Transducin/WD40 repeat-like superfamily protein
NRXP_003550920.10PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like isoform X1 [Glycine max]
COGYP_001864889.17.00E-17hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102]
Swissprottr|O22212|PRP4L_ARATH5.00E-08U4/U6 small nuclear ribonucleoprotein PRP4-like protein
trEMBLtr|I1MQV6|I1MQV6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G00740.7}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold063886904712-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur006388s00043251.1PF00400.27WD403183503.60E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control108.718
SRR1783600control109.160
SRR1783602moderate drought stress117.802
SRR1811619moderate drought stress117.281

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain124.314
DRR006520Root Summer glycyrrhizin high producing strain123.477
DRR006521Root Winter glycyrrhizin high producing strain187.481
DRR006522Root Winter glycyrrhizin high producing strain181.982
DRR006523Root Summer glycyrrhizin low producing strain153.435
DRR006524Root Summer glycyrrhizin low producing strain154.798
DRR006525Leaf Summer glycyrrhizin high producing strain49.404
DRR006526Leaf Summer glycyrrhizin high producing strain49.451

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)121.115
SRR2868004Drought Stress(Tissue:root)144.736
SRR2967015Control (Tissue:root)162.841

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave70.822
SRR9715740Leave68.433
SRR9715741Leave90.383
SRR9715739Root31.205
SRR9715742Root84.622
SRR9715743Root74.989

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h89.567
SRR8749028MeJA induced 9h176.693
SRR8749029MeJA induced 9h184.948
SRR8749030Uninduced127.094
SRR8749031Uninduced238.390
SRR8749032Uninduced250.334

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root143.750
SRR8400027Control-Root123.797

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved