Gene detail information of Glyur006455s00044559.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G32600.14.00E-94hydroxyproline-rich glycoprotein family protein
NRXP_008442733.11.47E-135PREDICTED: splicing factor 3A subunit 2 [Cucumis melo]
trEMBLtr|I1M5W5|I1M5W5_SOYBN6.00E-136Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G44430.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold064552111860+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0005634  nucleus


molecular_function

GO:0003676  nucleic acid binding

GO:0005515  protein binding

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur006455s00044559.1PF12874.2zf-met52762.80E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.794
SRR1783600control26.650
SRR1783602moderate drought stress34.391
SRR1811619moderate drought stress33.899

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.383
DRR006520Root Summer glycyrrhizin high producing strain26.671
DRR006521Root Winter glycyrrhizin high producing strain42.167
DRR006522Root Winter glycyrrhizin high producing strain40.515
DRR006523Root Summer glycyrrhizin low producing strain26.784
DRR006524Root Summer glycyrrhizin low producing strain26.474
DRR006525Leaf Summer glycyrrhizin high producing strain17.172
DRR006526Leaf Summer glycyrrhizin high producing strain17.442

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)30.784
SRR2868004Drought Stress(Tissue:root)32.453
SRR2967015Control (Tissue:root)33.795

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.240
SRR9715740Leave14.097
SRR9715741Leave14.962
SRR9715739Root24.623
SRR9715742Root35.851
SRR9715743Root30.830

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h46.443
SRR8749028MeJA induced 9h56.951
SRR8749029MeJA induced 9h45.986
SRR8749030Uninduced43.105
SRR8749031Uninduced27.314
SRR8749032Uninduced25.562

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root41.449
SRR8400027Control-Root40.204

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved