Gene detail information of Glyur006502s00046433.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G01510.12.00E-66like SEX4 1
NRXP_004514819.11.80E-93PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic-like [Cicer arietinum]
Swissprottr|F4J117|LSF1_ARATH4.00E-82Phosphoglucan phosphatase LSF1, chloroplastic (Precursor)
trEMBLtr|K7MWV9|K7MWV9_SOYBN2.00E-92Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G11100.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold065025024500+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM48


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006470  protein dephosphorylation


molecular_function

GO:0008138  protein tyrosine/serine/threonine phosphatase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur006502s00046433.1PF00782.15DSPc111145.40E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.842
SRR1783600control4.680
SRR1783602moderate drought stress4.697
SRR1811619moderate drought stress4.602

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.495
DRR006520Root Summer glycyrrhizin high producing strain14.613
DRR006521Root Winter glycyrrhizin high producing strain7.460
DRR006522Root Winter glycyrrhizin high producing strain7.461
DRR006523Root Summer glycyrrhizin low producing strain9.929
DRR006524Root Summer glycyrrhizin low producing strain10.632
DRR006525Leaf Summer glycyrrhizin high producing strain16.518
DRR006526Leaf Summer glycyrrhizin high producing strain16.226

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.551
SRR2868004Drought Stress(Tissue:root)10.321
SRR2967015Control (Tissue:root)8.293

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.849
SRR9715740Leave15.606
SRR9715741Leave12.784
SRR9715739Root4.841
SRR9715742Root8.175
SRR9715743Root6.176

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.989
SRR8749028MeJA induced 9h2.882
SRR8749029MeJA induced 9h2.869
SRR8749030Uninduced1.903
SRR8749031Uninduced0.080
SRR8749032Uninduced1.495

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.037
SRR8400027Control-Root16.961

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved