Gene detail information of Glyur006585s00045185.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G26340.1 | 1.00E-34 | F-box/RNI-like/FBD-like domains-containing protein |
| NR | XP_006602503.1 | 9.71E-127 | PREDICTED: F-box/FBD/LRR-repeat protein At5g56420-like [Glycine max] |
| Swissprot | tr|Q8H1R7|FDL27_ARATH | 1.00E-40 | F-box/FBD/LRR-repeat protein At4g26340 |
| trEMBL | tr|K7LAQ1|K7LAQ1_SOYBN | 1.00E-132 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G46581.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06585 | 3801 | 5111 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006585s00045185.1 | PF00646.28 | F-box | 4 | 39 | 2.10E-05 |
| Glyur006585s00045185.1 | PF08387.5 | FBD | 286 | 335 | 5.90E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.183 |
| SRR1783600 | control | 0.247 |
| SRR1783602 | moderate drought stress | 0.305 |
| SRR1811619 | moderate drought stress | 0.320 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.924 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.029 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.112 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.976 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.901 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.744 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.253 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.241 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.013 |
| SRR2967015 | Control (Tissue:root) | 1.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.443 |
| SRR9715740 | Leave | 0.694 |
| SRR9715741 | Leave | 0.803 |
| SRR9715739 | Root | 0.964 |
| SRR9715742 | Root | 1.821 |
| SRR9715743 | Root | 1.863 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.045 |
| SRR8749028 | MeJA induced 9h | 0.021 |
| SRR8749029 | MeJA induced 9h | 0.006 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.309 |
| SRR8400027 | Control-Root | 0.346 |