Gene detail information of Glyur006614s00044111.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | ATCG01050.1 | 8.00E-05 | NADH-Ubiquinone/plastoquinone (complex I) protein |
| Swissprot | tr|Q4VZL8|NU4C_CUCSA | 2.00E-06 | NAD(P)H-quinone oxidoreductase chain 4, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00491} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06614 | 4601 | 5156 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K05575 | ndhD | EC:1.6.5.3 | Oxidative phosphorylation | map00190 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.172 |
| SRR1783600 | control | 4.966 |
| SRR1783602 | moderate drought stress | 4.317 |
| SRR1811619 | moderate drought stress | 4.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.152 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.497 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.173 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.332 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.913 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.511 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.248 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.359 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.164 |
| SRR2967015 | Control (Tissue:root) | 0.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.837 |
| SRR9715740 | Leave | 1.099 |
| SRR9715741 | Leave | 2.096 |
| SRR9715739 | Root | 3.480 |
| SRR9715742 | Root | 3.049 |
| SRR9715743 | Root | 2.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.328 |
| SRR8749028 | MeJA induced 9h | 0.060 |
| SRR8749029 | MeJA induced 9h | 0.207 |
| SRR8749030 | Uninduced | 0.090 |
| SRR8749031 | Uninduced | 0.138 |
| SRR8749032 | Uninduced | 0.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.047 |
| SRR8400027 | Control-Root | 0.030 |