Gene detail information of Glyur006620s00046866.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G05430.1 | 4.00E-35 | Carbohydrate-binding X8 domain superfamily protein |
| NR | XP_006579395.1 | 1.11E-67 | PREDICTED: uncharacterized protein LOC100778330 isoform X1 [Glycine max] |
| Swissprot | tr|Q9FJU9|E1313_ARATH | 7.00E-28 | Glucan endo-1,3-beta-glucosidase 13 (Precursor) |
| trEMBL | tr|K7KQR7|K7KQR7_SOYBN | 4.00E-68 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G30540.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06620 | 4037 | 5386 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006620s00046866.1 | PF07983.8 | X8 | 34 | 106 | 5.20E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.083 |
| SRR1783600 | control | 0.168 |
| SRR1783602 | moderate drought stress | 0.087 |
| SRR1811619 | moderate drought stress | 0.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.745 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.244 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.499 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.746 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.639 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.046 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.891 |
| SRR2967015 | Control (Tissue:root) | 0.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.076 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.393 |
| SRR8400027 | Control-Root | 0.480 |