Gene detail information of Glyur006680s00046439.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G38250.1 | 4.00E-45 | Homeodomain-like superfamily protein |
| NR | XP_007140273.1 | 9.22E-123 | hypothetical protein PHAVU_008G098300g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SDW0|TGT3A_ARATH | 2.00E-75 | Trihelix transcription factor GT-3a |
| trEMBL | tr|V7B301|V7B301_PHAVU | 3.00E-123 | Uncharacterized protein {ECO:0000313|EMBL:ESW12267.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06680 | 2763 | 4806 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Trihelix |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006680s00046439.1 | PF13837.1 | Myb_DNA-bind_4 | 57 | 141 | 3.10E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.518 |
| SRR1783600 | control | 2.450 |
| SRR1783602 | moderate drought stress | 1.969 |
| SRR1811619 | moderate drought stress | 1.985 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.083 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.154 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.339 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.220 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 52.563 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 52.892 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.567 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.549 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.732 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.826 |
| SRR2967015 | Control (Tissue:root) | 6.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.226 |
| SRR9715740 | Leave | 8.474 |
| SRR9715741 | Leave | 23.448 |
| SRR9715739 | Root | 2.363 |
| SRR9715742 | Root | 6.314 |
| SRR9715743 | Root | 5.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 34.405 |
| SRR8749028 | MeJA induced 9h | 54.906 |
| SRR8749029 | MeJA induced 9h | 95.011 |
| SRR8749030 | Uninduced | 88.010 |
| SRR8749031 | Uninduced | 123.843 |
| SRR8749032 | Uninduced | 40.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.499 |
| SRR8400027 | Control-Root | 4.630 |