Gene detail information of Glyur006726s00042747.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75660.1 | 1.00E-64 | 5'-3' exoribonuclease 3 |
| NR | XP_007132483.1 | 1.74E-149 | hypothetical protein PHAVU_011G097800g [Phaseolus vulgaris] |
| Swissprot | tr|Q9FQ03|XRN3_ARATH | 9.00E-81 | 5'-3' exoribonuclease 3 |
| trEMBL | tr|V7AFU3|V7AFU3_PHAVU | 6.00E-150 | Uncharacterized protein {ECO:0000313|EMBL:ESW04477.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06726 | 92 | 4942 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K12619 | XRN2, RAT1 | EC:3.1.13.- | Ribosome biogenesis in eukaryotes | map03008 |
| RNA degradation | map03018 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006726s00042747.1 | PF03159.13 | XRN_N | 5 | 141 | 2.10E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.160 |
| SRR1783600 | control | 6.174 |
| SRR1783602 | moderate drought stress | 2.289 |
| SRR1811619 | moderate drought stress | 2.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.387 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.339 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.862 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.304 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.156 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.624 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.031 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.496 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.562 |
| SRR2967015 | Control (Tissue:root) | 0.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.782 |
| SRR9715740 | Leave | 2.381 |
| SRR9715741 | Leave | 2.905 |
| SRR9715739 | Root | 1.126 |
| SRR9715742 | Root | 7.516 |
| SRR9715743 | Root | 5.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.058 |
| SRR8749028 | MeJA induced 9h | 0.021 |
| SRR8749029 | MeJA induced 9h | 0.019 |
| SRR8749030 | Uninduced | 0.040 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.633 |
| SRR8400027 | Control-Root | 4.013 |