Gene detail information of Glyur006791s00044959.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G38620.11.00E-44myb domain protein 4
NRKDP34830.14.57E-58hypothetical protein JCGZ_11192 [Jatropha curcas]
Swissprottr|Q9SZP1|MYB4_ARATH1.00E-54Transcription repressor MYB4
trEMBLtr|A0A067KRC4|A0A067KRC4_JATCU2.00E-58Uncharacterized protein {ECO:0000313|EMBL:KDP34830.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0679140105044+


Gene family

Gene familysubfamily
Transcription Factors FamilyMYB
EAR motif-containing ProteinsMYB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0003682  chromatin binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur006791s00044959.1PF00249.26Myb_DNA-binding14421.10E-07
Glyur006791s00044959.1PF00249.26Myb_DNA-binding44831.50E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.386
SRR1783600control1.563
SRR1783602moderate drought stress0.361
SRR1811619moderate drought stress0.529

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.832
DRR006520Root Summer glycyrrhizin high producing strain1.029
DRR006521Root Winter glycyrrhizin high producing strain4.527
DRR006522Root Winter glycyrrhizin high producing strain4.242
DRR006523Root Summer glycyrrhizin low producing strain0.539
DRR006524Root Summer glycyrrhizin low producing strain0.720
DRR006525Leaf Summer glycyrrhizin high producing strain2.405
DRR006526Leaf Summer glycyrrhizin high producing strain2.294

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.003
SRR2868004Drought Stress(Tissue:root)28.487
SRR2967015Control (Tissue:root)29.095

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.525
SRR9715740Leave1.653
SRR9715741Leave1.736
SRR9715739Root1.147
SRR9715742Root2.645
SRR9715743Root2.284

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h101.653
SRR8749028MeJA induced 9h159.013
SRR8749029MeJA induced 9h154.150
SRR8749030Uninduced250.218
SRR8749031Uninduced765.585
SRR8749032Uninduced408.334

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.739
SRR8400027Control-Root2.455

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved