Gene detail information of Glyur006866s00045825.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76900.2 | 9.00E-163 | tubby like protein 1 |
| NR | XP_003592106.1 | 0 | Tubby-like F-box protein [Medicago truncatula] |
| Swissprot | tr|Q75HX5|TLP8_ORYSJ | 0 | Tubby-like F-box protein 8 |
| trEMBL | tr|G7ICY3|G7ICY3_MEDTR | 0 | Tubby-like F-box protein {ECO:0000256|RuleBase:RU361125} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06866 | 974 | 3460 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TUB |
| Ubiquitin Family | F-box |
| EAR motif-containing Proteins | TUB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006866s00045825.1 | PF00646.28 | F-box | 53 | 105 | 1.00E-09 |
| Glyur006866s00045825.1 | PF01167.13 | Tub | 117 | 429 | 2.10E-114 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.290 |
| SRR1783600 | control | 21.034 |
| SRR1783602 | moderate drought stress | 17.672 |
| SRR1811619 | moderate drought stress | 17.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.746 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.236 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.189 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.256 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 65.907 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 61.627 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.658 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 39.216 |
| SRR2868004 | Drought Stress(Tissue:root) | 47.594 |
| SRR2967015 | Control (Tissue:root) | 42.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 34.758 |
| SRR9715740 | Leave | 22.283 |
| SRR9715741 | Leave | 37.828 |
| SRR9715739 | Root | 15.001 |
| SRR9715742 | Root | 27.128 |
| SRR9715743 | Root | 22.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.851 |
| SRR8749028 | MeJA induced 9h | 48.306 |
| SRR8749029 | MeJA induced 9h | 51.063 |
| SRR8749030 | Uninduced | 64.878 |
| SRR8749031 | Uninduced | 76.230 |
| SRR8749032 | Uninduced | 83.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 19.330 |
| SRR8400027 | Control-Root | 20.122 |