Gene detail information of Glyur007009s00046902.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G73820.1 | 3.00E-07 | Ssu72-like family protein |
| NR | AFK35609.1 | 2.42E-13 | unknown [Lotus japonicus] |
| trEMBL | tr|I3S5R7|I3S5R7_LOTJA | 9.00E-14 | Uncharacterized protein {ECO:0000313|EMBL:AFK35609.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07009 | 877 | 4298 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K15544 | SSU72 | EC:3.1.3.16 | mRNA surveillance pathway | map03015 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.410 |
| SRR1783600 | control | 2.072 |
| SRR1783602 | moderate drought stress | 5.493 |
| SRR1811619 | moderate drought stress | 5.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.454 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.143 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.614 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.618 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.603 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.692 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.158 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.916 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.038 |
| SRR2967015 | Control (Tissue:root) | 1.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.150 |
| SRR9715740 | Leave | 0.985 |
| SRR9715741 | Leave | 2.211 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.828 |
| SRR9715743 | Root | 0.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.037 |
| SRR8749028 | MeJA induced 9h | 0.357 |
| SRR8749029 | MeJA induced 9h | 0.897 |
| SRR8749030 | Uninduced | 0.600 |
| SRR8749031 | Uninduced | 1.024 |
| SRR8749032 | Uninduced | 0.738 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.333 |
| SRR8400027 | Control-Root | 1.865 |