Gene detail information of Glyur007164s00047115.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G37040.10PHE ammonia lyase 1
NRACF94716.10phenylalanine ammonia lyase [Robinia pseudoacacia]
COGYP_007039255.13.00E-72Histidine ammonia-lyase [Saccharothrix espanaensis DSM 44229]
Swissprottr|P27990|PALY_MEDSA0Phenylalanine ammonia-lyase
trEMBLtr|B6S390|B6S390_ROBPS0Phenylalanine ammonia-lyase {ECO:0000256|RuleBase:RU003955}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0716420034272-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10775PAL EC:4.3.1.24 Phenylalanine metabolism map00360
Phenylpropanoid biosynthesismap00940


Gene Ontology

biological_process

GO:0006559  L-phenylalanine catabolic process

GO:0009058  biosynthetic process


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0003824  catalytic activity

GO:0016841  ammonia-lyase activity

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur007164s00047115.1PF00221.14Lyase_aromatic64218.20E-146


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.771
SRR1783600control4.666
SRR1783602moderate drought stress6.765
SRR1811619moderate drought stress6.916

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.278
DRR006520Root Summer glycyrrhizin high producing strain5.384
DRR006521Root Winter glycyrrhizin high producing strain0.194
DRR006522Root Winter glycyrrhizin high producing strain0.123
DRR006523Root Summer glycyrrhizin low producing strain9.023
DRR006524Root Summer glycyrrhizin low producing strain10.047
DRR006525Leaf Summer glycyrrhizin high producing strain14.245
DRR006526Leaf Summer glycyrrhizin high producing strain14.091

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)62.117
SRR2868004Drought Stress(Tissue:root)188.316
SRR2967015Control (Tissue:root)104.837

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave105.426
SRR9715740Leave44.881
SRR9715741Leave170.637
SRR9715739Root12.560
SRR9715742Root35.257
SRR9715743Root30.392

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.462
SRR8749028MeJA induced 9h9.871
SRR8749029MeJA induced 9h2.838
SRR8749030Uninduced155.504
SRR8749031Uninduced54.948
SRR8749032Uninduced35.885

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.512
SRR8400027Control-Root28.970

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved