Gene detail information of Glyur007267s00046387.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19670.1 | 3.00E-76 | chlorophyllase 1 |
| NR | XP_004512891.1 | 5.58E-163 | PREDICTED: chlorophyllase-1-like [Cicer arietinum] |
| COG | YP_003200998.1 | 9.00E-14 | chlorophyllase [Nakamurella multipartita DSM 44233] |
| Swissprot | tr|O22527|CLH1_ARATH | 6.00E-96 | Chlorophyllase-1 |
| trEMBL | tr|G7KML3|G7KML3_MEDTR | 1.00E-158 | Chlorophyllase enzyme {ECO:0000313|EMBL:AES76626.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07267 | 32 | 2234 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K08099 | E3.1.1.14 | EC:3.1.1.14 | Porphyrin and chlorophyll metabolism | map00860 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007267s00046387.1 | PF07224.6 | Chlorophyllase | 15 | 313 | 8.20E-112 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.106 |
| SRR1783600 | control | 0.097 |
| SRR1783602 | moderate drought stress | 0.173 |
| SRR1811619 | moderate drought stress | 0.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.098 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.097 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.825 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.534 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.261 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.251 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.153 |
| SRR2967015 | Control (Tissue:root) | 0.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 56.178 |
| SRR9715740 | Leave | 9.887 |
| SRR9715741 | Leave | 13.655 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.164 |
| SRR9715743 | Root | 0.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.220 |
| SRR8400027 | Control-Root | 0.055 |