Gene detail information of Glyur007291s00047809.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G58030.41.00E-92RING/U-box superfamily protein
NRXP_007162336.10hypothetical protein PHAVU_001G143400g [Phaseolus vulgaris]
Swissprottr|Q8GUK7|RMA3_ARATH2.00E-25E3 ubiquitin-protein ligase RMA3
trEMBLtr|V7CYG5|V7CYG5_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW34330.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0729119343265-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING
EAR motif-containing Proteinsother


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10666RNF5 EC:2.3.2.27 Protein processing in endoplasmic reticulum map04141


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur007291s00047809.1PF13923.1zf-C3HC4_21531931.10E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.948
SRR1783600control12.941
SRR1783602moderate drought stress17.072
SRR1811619moderate drought stress16.810

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.921
DRR006520Root Summer glycyrrhizin high producing strain20.899
DRR006521Root Winter glycyrrhizin high producing strain22.012
DRR006522Root Winter glycyrrhizin high producing strain20.702
DRR006523Root Summer glycyrrhizin low producing strain26.303
DRR006524Root Summer glycyrrhizin low producing strain27.554
DRR006525Leaf Summer glycyrrhizin high producing strain11.989
DRR006526Leaf Summer glycyrrhizin high producing strain11.687

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.065
SRR2868004Drought Stress(Tissue:root)25.691
SRR2967015Control (Tissue:root)34.350

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.400
SRR9715740Leave21.063
SRR9715741Leave18.621
SRR9715739Root43.426
SRR9715742Root30.467
SRR9715743Root33.087

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.037
SRR8749028MeJA induced 9h20.357
SRR8749029MeJA induced 9h23.619
SRR8749030Uninduced17.250
SRR8749031Uninduced18.133
SRR8749032Uninduced21.991

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.446
SRR8400027Control-Root17.702

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved