Gene detail information of Glyur007318s00045760.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13870.12.00E-142xyloglucan endotransglucosylase/hydrolase 5
NRXP_003624550.10Xyloglucan endotransglucosylase [Medicago truncatula]
COGYP_002264432.17.00E-14exported glycosyl hydrolase, family 16 [Aliivibrio salmonicida LFI1238]
Swissprottr|Q8LNZ5|XTHB_PHAAN0Probable xyloglucan endotransglucosylase/hydrolase protein B (Precursor)
trEMBLtr|Q2HRU5|Q2HRU5_MEDTR0Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0731828394386-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH16


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006073  cellular glucan metabolic process


cellular_component

GO:0005618  cell wall

GO:0048046  apoplast


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762  xyloglucan:xyloglucosyl transferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur007318s00045760.1PF00722.16Glyco_hydro_16492307.20E-61
Glyur007318s00045760.1PF06955.7XET_C2543041.60E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control136.717
SRR1783600control134.988
SRR1783602moderate drought stress29.796
SRR1811619moderate drought stress28.331

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain44.067
DRR006520Root Summer glycyrrhizin high producing strain43.201
DRR006521Root Winter glycyrrhizin high producing strain1.094
DRR006522Root Winter glycyrrhizin high producing strain1.246
DRR006523Root Summer glycyrrhizin low producing strain50.792
DRR006524Root Summer glycyrrhizin low producing strain50.349
DRR006525Leaf Summer glycyrrhizin high producing strain0.917
DRR006526Leaf Summer glycyrrhizin high producing strain0.723

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)179.615
SRR2868004Drought Stress(Tissue:root)52.790
SRR2967015Control (Tissue:root)69.088

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.915
SRR9715740Leave2.185
SRR9715741Leave3.592
SRR9715739Root85.102
SRR9715742Root73.061
SRR9715743Root78.925

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h344.770
SRR8749028MeJA induced 9h66.451
SRR8749029MeJA induced 9h170.825
SRR8749030Uninduced59.927
SRR8749031Uninduced14.695
SRR8749032Uninduced81.104

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root379.313
SRR8400027Control-Root368.454

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved