Gene detail information of Glyur007494s00043737.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G34030.103-methylcrotonyl-CoA carboxylase
NRXP_004505231.10PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial-like isoform X1 [Cicer arietinum]
COGYP_004865220.10carboxyl transferase domain-containing protein [Micavibrio aeruginosavorus ARL-13]
Swissprottr|Q9LDD8|MCCB_ARATH0Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial (Precursor)
trEMBLtr|G7JL66|G7JL66_MEDTR0Methylcrotonyl-CoA carboxylase beta chain, putative {ECO:0000313|EMBL:AES90153.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold074942554122-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01969E6.4.1.4B EC:6.4.1.4 Valine, leucine and isoleucine degradation map00280


Gene Ontology

molecular_function

GO:0016874  ligase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur007494s00043737.1PF01039.17Carboxyl_trans615454.40E-162


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.287
SRR1783600control6.204
SRR1783602moderate drought stress9.340
SRR1811619moderate drought stress9.070

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.433
DRR006520Root Summer glycyrrhizin high producing strain9.915
DRR006521Root Winter glycyrrhizin high producing strain19.645
DRR006522Root Winter glycyrrhizin high producing strain19.098
DRR006523Root Summer glycyrrhizin low producing strain10.072
DRR006524Root Summer glycyrrhizin low producing strain10.016
DRR006525Leaf Summer glycyrrhizin high producing strain9.589
DRR006526Leaf Summer glycyrrhizin high producing strain9.511

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.379
SRR2868004Drought Stress(Tissue:root)25.455
SRR2967015Control (Tissue:root)40.525

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.229
SRR9715740Leave16.851
SRR9715741Leave12.381
SRR9715739Root2.752
SRR9715742Root5.113
SRR9715743Root4.767

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.039
SRR8749028MeJA induced 9h28.611
SRR8749029MeJA induced 9h15.698
SRR8749030Uninduced22.041
SRR8749031Uninduced37.295
SRR8749032Uninduced41.456

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.666
SRR8400027Control-Root20.225

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved