Gene detail information of Glyur007606s00046215.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G16715.17.00E-31ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases
NRXP_004489655.11.09E-49PREDICTED: valine--tRNA ligase-like [Cicer arietinum]
COGYP_004175367.11.00E-19valyl-tRNA synthetase [Anaerolinea thermophila UNI-1]
Swissprottr|P93736|SYV_ARATH2.00E-11Valine--tRNA ligase
trEMBLtr|K7MMG6|K7MMG6_SOYBN5.00E-49Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G24046.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0760617723630+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01873VARS, valS EC:6.1.1.9 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur007606s00046215.1PF00133.17tRNA-synt_1901341.20E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.791
SRR1783600control9.627
SRR1783602moderate drought stress7.931
SRR1811619moderate drought stress8.245

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.664
DRR006520Root Summer glycyrrhizin high producing strain1.832
DRR006521Root Winter glycyrrhizin high producing strain2.763
DRR006522Root Winter glycyrrhizin high producing strain2.508
DRR006523Root Summer glycyrrhizin low producing strain2.963
DRR006524Root Summer glycyrrhizin low producing strain2.966
DRR006525Leaf Summer glycyrrhizin high producing strain10.337
DRR006526Leaf Summer glycyrrhizin high producing strain9.936

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.911
SRR2868004Drought Stress(Tissue:root)4.095
SRR2967015Control (Tissue:root)4.605

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.380
SRR9715740Leave4.984
SRR9715741Leave3.253
SRR9715739Root0.475
SRR9715742Root5.685
SRR9715743Root3.030

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.278
SRR8749028MeJA induced 9h5.000
SRR8749029MeJA induced 9h0.933
SRR8749030Uninduced0.423
SRR8749031Uninduced0.293
SRR8749032Uninduced0.218

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.687
SRR8400027Control-Root6.904

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved