Gene detail information of Glyur007747s00045556.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62690.1 | 7.00E-23 | AtL5 |
| NR | XP_006574543.1 | 5.06E-73 | PREDICTED: RING-H2 finger protein ATL2-like [Glycine max] |
| Swissprot | tr|Q9LZJ6|ATL5_ARATH | 3.00E-33 | RING-H2 finger protein ATL5 |
| trEMBL | tr|K7K5Y0|K7K5Y0_SOYBN | 1.00E-73 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G02040.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07747 | 2667 | 3281 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007747s00045556.1 | PF13639.1 | zf-RING_2 | 85 | 128 | 5.40E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.243 |
| SRR1783600 | control | 3.003 |
| SRR1783602 | moderate drought stress | 0.887 |
| SRR1811619 | moderate drought stress | 0.981 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.421 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.193 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.503 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.117 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.768 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.759 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.151 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.749 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.246 |
| SRR2967015 | Control (Tissue:root) | 7.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.888 |
| SRR9715740 | Leave | 0.155 |
| SRR9715741 | Leave | 0.389 |
| SRR9715739 | Root | 1.357 |
| SRR9715742 | Root | 1.772 |
| SRR9715743 | Root | 2.383 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.497 |
| SRR8749028 | MeJA induced 9h | 1.335 |
| SRR8749029 | MeJA induced 9h | 1.663 |
| SRR8749030 | Uninduced | 0.902 |
| SRR8749031 | Uninduced | 0.799 |
| SRR8749032 | Uninduced | 1.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.154 |
| SRR8400027 | Control-Root | 1.426 |